Protein language models can capture protein quaternary state Article Swipe
Orly Avraham
,
Tomer Tsaban
,
Ziv Ben-Aharon
,
Linoy Tsaban
,
Ora Schueler‐Furman
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1186/s12859-023-05549-w
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1186/s12859-023-05549-w
Related Topics
Concepts
Protein quaternary structure
Computer science
Artificial intelligence
Quaternary
Context (archaeology)
Quaternary science
Complement (music)
Natural language processing
Machine learning
Biology
Genetics
Complementation
Phenotype
Gene
Protein subunit
Paleontology
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1186/s12859-023-05549-w
- https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-w
- OA Status
- gold
- Cited By
- 22
- References
- 40
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4388656332
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4388656332Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1186/s12859-023-05549-wDigital Object Identifier
- Title
-
Protein language models can capture protein quaternary stateWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-11-14Full publication date if available
- Authors
-
Orly Avraham, Tomer Tsaban, Ziv Ben-Aharon, Linoy Tsaban, Ora Schueler‐FurmanList of authors in order
- Landing page
-
https://doi.org/10.1186/s12859-023-05549-wPublisher landing page
- PDF URL
-
https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-wDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-wDirect OA link when available
- Concepts
-
Protein quaternary structure, Computer science, Artificial intelligence, Quaternary, Context (archaeology), Quaternary science, Complement (music), Natural language processing, Machine learning, Biology, Genetics, Complementation, Phenotype, Gene, Protein subunit, PaleontologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
22Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 14, 2024: 7, 2023: 1Per-year citation counts (last 5 years)
- References (count)
-
40Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4388656332 |
|---|---|
| doi | https://doi.org/10.1186/s12859-023-05549-w |
| ids.doi | https://doi.org/10.1186/s12859-023-05549-w |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/37964216 |
| ids.openalex | https://openalex.org/W4388656332 |
| fwci | 4.08474897 |
| mesh[0].qualifier_ui | Q000737 |
| mesh[0].descriptor_ui | D011506 |
| mesh[0].is_major_topic | True |
| mesh[0].qualifier_name | chemistry |
| mesh[0].descriptor_name | Proteins |
| mesh[1].qualifier_ui | |
| mesh[1].descriptor_ui | D000595 |
| mesh[1].is_major_topic | False |
| mesh[1].qualifier_name | |
| mesh[1].descriptor_name | Amino Acid Sequence |
| mesh[2].qualifier_ui | |
| mesh[2].descriptor_ui | D007802 |
| mesh[2].is_major_topic | True |
| mesh[2].qualifier_name | |
| mesh[2].descriptor_name | Language |
| mesh[3].qualifier_ui | |
| mesh[3].descriptor_ui | D017433 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | |
| mesh[3].descriptor_name | Protein Structure, Secondary |
| mesh[4].qualifier_ui | |
| mesh[4].descriptor_ui | D021381 |
| mesh[4].is_major_topic | False |
| mesh[4].qualifier_name | |
| mesh[4].descriptor_name | Protein Transport |
| mesh[5].qualifier_ui | Q000737 |
| mesh[5].descriptor_ui | D011506 |
| mesh[5].is_major_topic | True |
| mesh[5].qualifier_name | chemistry |
| mesh[5].descriptor_name | Proteins |
| mesh[6].qualifier_ui | |
| mesh[6].descriptor_ui | D000595 |
| mesh[6].is_major_topic | False |
| mesh[6].qualifier_name | |
| mesh[6].descriptor_name | Amino Acid Sequence |
| mesh[7].qualifier_ui | |
| mesh[7].descriptor_ui | D007802 |
| mesh[7].is_major_topic | True |
| mesh[7].qualifier_name | |
| mesh[7].descriptor_name | Language |
| mesh[8].qualifier_ui | |
| mesh[8].descriptor_ui | D017433 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | |
| mesh[8].descriptor_name | Protein Structure, Secondary |
| mesh[9].qualifier_ui | |
| mesh[9].descriptor_ui | D021381 |
| mesh[9].is_major_topic | False |
| mesh[9].qualifier_name | |
| mesh[9].descriptor_name | Protein Transport |
| mesh[10].qualifier_ui | Q000737 |
| mesh[10].descriptor_ui | D011506 |
| mesh[10].is_major_topic | True |
| mesh[10].qualifier_name | chemistry |
| mesh[10].descriptor_name | Proteins |
| mesh[11].qualifier_ui | |
| mesh[11].descriptor_ui | D000595 |
| mesh[11].is_major_topic | False |
| mesh[11].qualifier_name | |
| mesh[11].descriptor_name | Amino Acid Sequence |
| mesh[12].qualifier_ui | |
| mesh[12].descriptor_ui | D007802 |
| mesh[12].is_major_topic | True |
| mesh[12].qualifier_name | |
| mesh[12].descriptor_name | Language |
| mesh[13].qualifier_ui | |
| mesh[13].descriptor_ui | D017433 |
| mesh[13].is_major_topic | False |
| mesh[13].qualifier_name | |
| mesh[13].descriptor_name | Protein Structure, Secondary |
| mesh[14].qualifier_ui | |
| mesh[14].descriptor_ui | D021381 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | |
| mesh[14].descriptor_name | Protein Transport |
| type | article |
| title | Protein language models can capture protein quaternary state |
| awards[0].id | https://openalex.org/G6839720086 |
| awards[0].funder_id | https://openalex.org/F4320322252 |
| awards[0].display_name | |
| awards[0].funder_award_id | 301/2021 |
| awards[0].funder_display_name | Israel Science Foundation |
| biblio.issue | 1 |
| biblio.volume | 24 |
| biblio.last_page | 433 |
| biblio.first_page | 433 |
| topics[0].id | https://openalex.org/T10044 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9995999932289124 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | Protein Structure and Dynamics |
| topics[1].id | https://openalex.org/T12254 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.9994000196456909 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1312 |
| topics[1].subfield.display_name | Molecular Biology |
| topics[1].display_name | Machine Learning in Bioinformatics |
| topics[2].id | https://openalex.org/T10521 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9976000189781189 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1312 |
| topics[2].subfield.display_name | Molecular Biology |
| topics[2].display_name | RNA and protein synthesis mechanisms |
| funders[0].id | https://openalex.org/F4320322252 |
| funders[0].ror | https://ror.org/04sazxf24 |
| funders[0].display_name | Israel Science Foundation |
| is_xpac | False |
| apc_list.value | 1690 |
| apc_list.currency | GBP |
| apc_list.value_usd | 2072 |
| apc_paid.value | 1690 |
| apc_paid.currency | GBP |
| apc_paid.value_usd | 2072 |
| concepts[0].id | https://openalex.org/C7927669 |
| concepts[0].level | 4 |
| concepts[0].score | 0.8524582386016846 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q898529 |
| concepts[0].display_name | Protein quaternary structure |
| concepts[1].id | https://openalex.org/C41008148 |
| concepts[1].level | 0 |
| concepts[1].score | 0.6131182312965393 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[1].display_name | Computer science |
| concepts[2].id | https://openalex.org/C154945302 |
| concepts[2].level | 1 |
| concepts[2].score | 0.5634199380874634 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[2].display_name | Artificial intelligence |
| concepts[3].id | https://openalex.org/C160464908 |
| concepts[3].level | 2 |
| concepts[3].score | 0.5522025227546692 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q26185 |
| concepts[3].display_name | Quaternary |
| concepts[4].id | https://openalex.org/C2779343474 |
| concepts[4].level | 2 |
| concepts[4].score | 0.5379285216331482 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q3109175 |
| concepts[4].display_name | Context (archaeology) |
| concepts[5].id | https://openalex.org/C197177315 |
| concepts[5].level | 3 |
| concepts[5].score | 0.4393075704574585 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q2453249 |
| concepts[5].display_name | Quaternary science |
| concepts[6].id | https://openalex.org/C112313634 |
| concepts[6].level | 5 |
| concepts[6].score | 0.4197912812232971 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q7886648 |
| concepts[6].display_name | Complement (music) |
| concepts[7].id | https://openalex.org/C204321447 |
| concepts[7].level | 1 |
| concepts[7].score | 0.37276315689086914 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q30642 |
| concepts[7].display_name | Natural language processing |
| concepts[8].id | https://openalex.org/C119857082 |
| concepts[8].level | 1 |
| concepts[8].score | 0.34603679180145264 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q2539 |
| concepts[8].display_name | Machine learning |
| concepts[9].id | https://openalex.org/C86803240 |
| concepts[9].level | 0 |
| concepts[9].score | 0.19368955492973328 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[9].display_name | Biology |
| concepts[10].id | https://openalex.org/C54355233 |
| concepts[10].level | 1 |
| concepts[10].score | 0.09802988171577454 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[10].display_name | Genetics |
| concepts[11].id | https://openalex.org/C188082640 |
| concepts[11].level | 4 |
| concepts[11].score | 0.0 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q1780899 |
| concepts[11].display_name | Complementation |
| concepts[12].id | https://openalex.org/C127716648 |
| concepts[12].level | 3 |
| concepts[12].score | 0.0 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q104053 |
| concepts[12].display_name | Phenotype |
| concepts[13].id | https://openalex.org/C104317684 |
| concepts[13].level | 2 |
| concepts[13].score | 0.0 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[13].display_name | Gene |
| concepts[14].id | https://openalex.org/C104292427 |
| concepts[14].level | 3 |
| concepts[14].score | 0.0 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q899781 |
| concepts[14].display_name | Protein subunit |
| concepts[15].id | https://openalex.org/C151730666 |
| concepts[15].level | 1 |
| concepts[15].score | 0.0 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q7205 |
| concepts[15].display_name | Paleontology |
| keywords[0].id | https://openalex.org/keywords/protein-quaternary-structure |
| keywords[0].score | 0.8524582386016846 |
| keywords[0].display_name | Protein quaternary structure |
| keywords[1].id | https://openalex.org/keywords/computer-science |
| keywords[1].score | 0.6131182312965393 |
| keywords[1].display_name | Computer science |
| keywords[2].id | https://openalex.org/keywords/artificial-intelligence |
| keywords[2].score | 0.5634199380874634 |
| keywords[2].display_name | Artificial intelligence |
| keywords[3].id | https://openalex.org/keywords/quaternary |
| keywords[3].score | 0.5522025227546692 |
| keywords[3].display_name | Quaternary |
| keywords[4].id | https://openalex.org/keywords/context |
| keywords[4].score | 0.5379285216331482 |
| keywords[4].display_name | Context (archaeology) |
| keywords[5].id | https://openalex.org/keywords/quaternary-science |
| keywords[5].score | 0.4393075704574585 |
| keywords[5].display_name | Quaternary science |
| keywords[6].id | https://openalex.org/keywords/complement |
| keywords[6].score | 0.4197912812232971 |
| keywords[6].display_name | Complement (music) |
| keywords[7].id | https://openalex.org/keywords/natural-language-processing |
| keywords[7].score | 0.37276315689086914 |
| keywords[7].display_name | Natural language processing |
| keywords[8].id | https://openalex.org/keywords/machine-learning |
| keywords[8].score | 0.34603679180145264 |
| keywords[8].display_name | Machine learning |
| keywords[9].id | https://openalex.org/keywords/biology |
| keywords[9].score | 0.19368955492973328 |
| keywords[9].display_name | Biology |
| keywords[10].id | https://openalex.org/keywords/genetics |
| keywords[10].score | 0.09802988171577454 |
| keywords[10].display_name | Genetics |
| language | en |
| locations[0].id | doi:10.1186/s12859-023-05549-w |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S19032547 |
| locations[0].source.issn | 1471-2105 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 1471-2105 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | BMC Bioinformatics |
| locations[0].source.host_organization | https://openalex.org/P4310320256 |
| locations[0].source.host_organization_name | BioMed Central |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310320256, https://openalex.org/P4310319965 |
| locations[0].source.host_organization_lineage_names | BioMed Central, Springer Nature |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-w |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | BMC Bioinformatics |
| locations[0].landing_page_url | https://doi.org/10.1186/s12859-023-05549-w |
| locations[1].id | pmid:37964216 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | BMC bioinformatics |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/37964216 |
| locations[2].id | pmh:oai:pubmedcentral.nih.gov:10647083 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S2764455111 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | PubMed Central |
| locations[2].source.host_organization | https://openalex.org/I1299303238 |
| locations[2].source.host_organization_name | National Institutes of Health |
| locations[2].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[2].license | cc-by |
| locations[2].pdf_url | https://pmc.ncbi.nlm.nih.gov/articles/PMC10647083/pdf/12859_2023_Article_5549.pdf |
| locations[2].version | submittedVersion |
| locations[2].raw_type | Text |
| locations[2].license_id | https://openalex.org/licenses/cc-by |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | BMC Bioinformatics |
| locations[2].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/10647083 |
| locations[3].id | pmh:oai:doaj.org/article:a66efeb1f8f24b18b311ff73bedf1f54 |
| locations[3].is_oa | False |
| locations[3].source.id | https://openalex.org/S4306401280 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[3].source.host_organization | |
| locations[3].source.host_organization_name | |
| locations[3].license | |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | article |
| locations[3].license_id | |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | BMC Bioinformatics, Vol 24, Iss 1, Pp 1-18 (2023) |
| locations[3].landing_page_url | https://doaj.org/article/a66efeb1f8f24b18b311ff73bedf1f54 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5000314063 |
| authorships[0].author.orcid | https://orcid.org/0000-0002-2477-0777 |
| authorships[0].author.display_name | Orly Avraham |
| authorships[0].countries | IL |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I197251160 |
| authorships[0].affiliations[0].raw_affiliation_string | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[0].institutions[0].id | https://openalex.org/I197251160 |
| authorships[0].institutions[0].ror | https://ror.org/03qxff017 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I197251160 |
| authorships[0].institutions[0].country_code | IL |
| authorships[0].institutions[0].display_name | Hebrew University of Jerusalem |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Orly Avraham |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[1].author.id | https://openalex.org/A5090760854 |
| authorships[1].author.orcid | https://orcid.org/0000-0002-5251-0817 |
| authorships[1].author.display_name | Tomer Tsaban |
| authorships[1].countries | IL |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I197251160 |
| authorships[1].affiliations[0].raw_affiliation_string | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[1].institutions[0].id | https://openalex.org/I197251160 |
| authorships[1].institutions[0].ror | https://ror.org/03qxff017 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I197251160 |
| authorships[1].institutions[0].country_code | IL |
| authorships[1].institutions[0].display_name | Hebrew University of Jerusalem |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Tomer Tsaban |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[2].author.id | https://openalex.org/A5014431161 |
| authorships[2].author.orcid | |
| authorships[2].author.display_name | Ziv Ben-Aharon |
| authorships[2].countries | IL |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I197251160 |
| authorships[2].affiliations[0].raw_affiliation_string | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[2].institutions[0].id | https://openalex.org/I197251160 |
| authorships[2].institutions[0].ror | https://ror.org/03qxff017 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I197251160 |
| authorships[2].institutions[0].country_code | IL |
| authorships[2].institutions[0].display_name | Hebrew University of Jerusalem |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Ziv Ben-Aharon |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[3].author.id | https://openalex.org/A5066676614 |
| authorships[3].author.orcid | https://orcid.org/0000-0002-3618-410X |
| authorships[3].author.display_name | Linoy Tsaban |
| authorships[3].countries | IL |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I197251160, https://openalex.org/I2799899409 |
| authorships[3].affiliations[0].raw_affiliation_string | Gaffin Center for Neuro-Oncology, Sharett Institute for Oncology, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[3].affiliations[1].institution_ids | https://openalex.org/I197251160, https://openalex.org/I2799899409 |
| authorships[3].affiliations[1].raw_affiliation_string | The Wohl Institute for Translational Medicine, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[3].institutions[0].id | https://openalex.org/I2799899409 |
| authorships[3].institutions[0].ror | https://ror.org/01cqmqj90 |
| authorships[3].institutions[0].type | healthcare |
| authorships[3].institutions[0].lineage | https://openalex.org/I2799899409 |
| authorships[3].institutions[0].country_code | IL |
| authorships[3].institutions[0].display_name | Hadassah Medical Center |
| authorships[3].institutions[1].id | https://openalex.org/I197251160 |
| authorships[3].institutions[1].ror | https://ror.org/03qxff017 |
| authorships[3].institutions[1].type | education |
| authorships[3].institutions[1].lineage | https://openalex.org/I197251160 |
| authorships[3].institutions[1].country_code | IL |
| authorships[3].institutions[1].display_name | Hebrew University of Jerusalem |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Linoy Tsaban |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Gaffin Center for Neuro-Oncology, Sharett Institute for Oncology, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel, The Wohl Institute for Translational Medicine, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[4].author.id | https://openalex.org/A5034150494 |
| authorships[4].author.orcid | https://orcid.org/0000-0002-1624-0362 |
| authorships[4].author.display_name | Ora Schueler‐Furman |
| authorships[4].countries | IL |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I197251160 |
| authorships[4].affiliations[0].raw_affiliation_string | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| authorships[4].institutions[0].id | https://openalex.org/I197251160 |
| authorships[4].institutions[0].ror | https://ror.org/03qxff017 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I197251160 |
| authorships[4].institutions[0].country_code | IL |
| authorships[4].institutions[0].display_name | Hebrew University of Jerusalem |
| authorships[4].author_position | last |
| authorships[4].raw_author_name | Ora Schueler-Furman |
| authorships[4].is_corresponding | True |
| authorships[4].raw_affiliation_strings | Department of Microbiology and Molecular Genetics, Faculty of Medicine, Institute for Biomedical Research Israel-Canada, The Hebrew University of Jerusalem, Jerusalem, Israel |
| has_content.pdf | True |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-w |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Protein language models can capture protein quaternary state |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-12-21T01:58:51.020947 |
| primary_topic.id | https://openalex.org/T10044 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9995999932289124 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | Protein Structure and Dynamics |
| related_works | https://openalex.org/W4256699294, https://openalex.org/W1525963165, https://openalex.org/W2141069156, https://openalex.org/W2487479034, https://openalex.org/W150001115, https://openalex.org/W223523531, https://openalex.org/W2080858411, https://openalex.org/W600685031, https://openalex.org/W2506161443, https://openalex.org/W2471095811 |
| cited_by_count | 22 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 14 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 7 |
| counts_by_year[2].year | 2023 |
| counts_by_year[2].cited_by_count | 1 |
| locations_count | 4 |
| best_oa_location.id | doi:10.1186/s12859-023-05549-w |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S19032547 |
| best_oa_location.source.issn | 1471-2105 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 1471-2105 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | BMC Bioinformatics |
| best_oa_location.source.host_organization | https://openalex.org/P4310320256 |
| best_oa_location.source.host_organization_name | BioMed Central |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310320256, https://openalex.org/P4310319965 |
| best_oa_location.source.host_organization_lineage_names | BioMed Central, Springer Nature |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-w |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | BMC Bioinformatics |
| best_oa_location.landing_page_url | https://doi.org/10.1186/s12859-023-05549-w |
| primary_location.id | doi:10.1186/s12859-023-05549-w |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S19032547 |
| primary_location.source.issn | 1471-2105 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 1471-2105 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | BMC Bioinformatics |
| primary_location.source.host_organization | https://openalex.org/P4310320256 |
| primary_location.source.host_organization_name | BioMed Central |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310320256, https://openalex.org/P4310319965 |
| primary_location.source.host_organization_lineage_names | BioMed Central, Springer Nature |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-023-05549-w |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | BMC Bioinformatics |
| primary_location.landing_page_url | https://doi.org/10.1186/s12859-023-05549-w |
| publication_date | 2023-11-14 |
| publication_year | 2023 |
| referenced_works | https://openalex.org/W2152764495, https://openalex.org/W4296695943, https://openalex.org/W2106357210, https://openalex.org/W2949693295, https://openalex.org/W2103017472, https://openalex.org/W3112600195, https://openalex.org/W4307425304, https://openalex.org/W1965827393, https://openalex.org/W3095583226, https://openalex.org/W3106745904, https://openalex.org/W3005560673, https://openalex.org/W2035503835, https://openalex.org/W2081598613, https://openalex.org/W2605158478, https://openalex.org/W3004762425, https://openalex.org/W2768330140, https://openalex.org/W4308463927, https://openalex.org/W4380272022, https://openalex.org/W4323538612, https://openalex.org/W2169478909, https://openalex.org/W2980789587, https://openalex.org/W3040739508, https://openalex.org/W4312197262, https://openalex.org/W4327550249, https://openalex.org/W4225438928, https://openalex.org/W4322617258, https://openalex.org/W2130479394, https://openalex.org/W3118936575, https://openalex.org/W4309485183, https://openalex.org/W3144701084, https://openalex.org/W4213112325, https://openalex.org/W4211208250, https://openalex.org/W2950954328, https://openalex.org/W2889326414, https://openalex.org/W2521200999, https://openalex.org/W2342249984, https://openalex.org/W2011301426, https://openalex.org/W3150635270, https://openalex.org/W4385798891, https://openalex.org/W4391563878 |
| referenced_works_count | 40 |
| abstract_inverted_index | |
| cited_by_percentile_year.max | 100 |
| cited_by_percentile_year.min | 89 |
| corresponding_author_ids | https://openalex.org/A5034150494 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 5 |
| corresponding_institution_ids | https://openalex.org/I197251160 |
| citation_normalized_percentile.value | 0.94264319 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |