Field Programmable Gate Array (FPGA)-based embedded systems have become mainstream in the last decade, often in security-sensitive applications. However, even with an authenticated hardware platform, compromised software can severely jeopardize the overall system security, making hardware protection insufficient if the software itself is malicious. In this paper, we propose a novel low-overhead hardware-software co-design solution that utilizes Physical Unclonable Functions (PUFs) to ensure the authenticity of pro…