PUMA pipeline output Article Swipe

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O. W. Butters , Rebecca Wilson , Hugh Garner , Thomas Burton ·

YOU? · · 2021 · Open Access · · DOI: https://doi.org/10.5281/zenodo.4545741

Output of the PUMA (PUblications Metadata Augmentation) software pipeline which takes a list of journal articles and augments it with metadata from external sources. This augmented metadata is then processed to generate data files and an explorable/searchable set of HTML pages. The PUMA pipeline is available at: https://github.com/OllyButters/puma and is described at: https://doi.org/10.12688/f1000research.25484.1 These attached files are the result of running the pipeline on the list of publications described at: https://doi.org/10.12688/wellcomeopenres.14986.1 on 2021-01-15. Rerunning the pipeline on this list may result in slightly different outputs due to the changing content of the external metadata sources. Screenshots of the output HTML pages: PUMA_home_2021-01-15.png - Summary of all publications. PUMA_2011_2021-01-15.png - All publications from 2011. PUMA_map_2021-01-15.png - Choropleth map of first author's country. PUMA_asthma_2021-01-15.png - All publications with an asthma MeSH. PUMA_metrics_2021-01-15.png - Simple metrics. PUMA_word_cloud_2021-01-15.png - Word cloud of abstract text. PUMA_coverage_2021-01-15.png - Table showing completeness of metadata. Generated data files authors.csv - Frequency of authors. first_authors.csv - Frequency of first authors. first_authors_inst.csv - Frequency of first authors' institutes. journals.csv - Frequency of journals published in. abstract_lemmatized.csv - Frequency of lemmatized abstract words. abstract_lemmatized_by_year.csv - Frequency of lemmatized abstract words broken down by year. title_lemmatized.csv - Frequency of lemmatized title words. title_lemmatized_by_year.csv - Frequency of lemmatized title words broken down by year. keywords_lemmatized.csv - Frequency of lemmatized keywords. keywords_lemmatized_by_year.csv - Frequency of lemmatized keywords broken down by year.

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Concepts

Puma Pipeline (software) Computer science Chemistry Operating system Gene Biochemistry

Metadata

Type: dataset
Language: en
Landing Page: https://doi.org/10.5281/zenodo.4545741
OA Status: green
Related Works: 10
OpenAlex ID: https://openalex.org/W4393830107

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OpenAlex ID: https://openalex.org/W4393830107

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DOI: https://doi.org/10.5281/zenodo.4545741

Digital Object Identifier
Title: PUMA pipeline output

Work title
Type: dataset

OpenAlex work type
Language: en

Primary language
Publication year: 2021

Year of publication
Publication date: 2021-02-26

Full publication date if available
Authors: O. W. Butters, Rebecca Wilson, Hugh Garner, Thomas Burton

List of authors in order
Landing page: https://doi.org/10.5281/zenodo.4545741

Publisher landing page
Open access: Yes

Whether a free full text is available
OA status: green

Open access status per OpenAlex
OA URL: https://doi.org/10.5281/zenodo.4545741

Direct OA link when available
Concepts: Puma, Pipeline (software), Computer science, Chemistry, Operating system, Gene, Biochemistry

Top concepts (fields/topics) attached by OpenAlex
Cited by: 0

Total citation count in OpenAlex
Related works (count): 10

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