q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomics Article Swipe
Myrl G. Marmarelis
,
Russell Littman
,
Francesca Battaglin
,
Donna Niedzwiecki
,
Alan P. Venook
,
José Luis Ambite
,
Aram Galstyan
,
Heinz‐Josef Lenz
,
Greg Ver Steeg
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1038/s42003-024-06104-w
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1038/s42003-024-06104-w
Related Topics
Concepts
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1038/s42003-024-06104-w
- https://www.nature.com/articles/s42003-024-06104-w.pdf
- OA Status
- gold
- Cited By
- 1
- References
- 88
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4393428084
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4393428084Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1038/s42003-024-06104-wDigital Object Identifier
- Title
-
q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomicsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-04-02Full publication date if available
- Authors
-
Myrl G. Marmarelis, Russell Littman, Francesca Battaglin, Donna Niedzwiecki, Alan P. Venook, José Luis Ambite, Aram Galstyan, Heinz‐Josef Lenz, Greg Ver SteegList of authors in order
- Landing page
-
https://doi.org/10.1038/s42003-024-06104-wPublisher landing page
- PDF URL
-
https://www.nature.com/articles/s42003-024-06104-w.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.nature.com/articles/s42003-024-06104-w.pdfDirect OA link when available
- Concepts
-
Computer science, Curse of dimensionality, Computational biology, Diffusion MRI, Segmentation, Artificial intelligence, Diffusion, Cluster analysis, Bioinformatics, Data mining, Biology, Medicine, Physics, Magnetic resonance imaging, Radiology, ThermodynamicsTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
1Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 1Per-year citation counts (last 5 years)
- References (count)
-
88Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4393428084 |
|---|---|
| doi | https://doi.org/10.1038/s42003-024-06104-w |
| ids.doi | https://doi.org/10.1038/s42003-024-06104-w |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/38565955 |
| ids.openalex | https://openalex.org/W4393428084 |
| fwci | 0.48024723 |
| mesh[0].qualifier_ui | |
| mesh[0].descriptor_ui | D006801 |
| mesh[0].is_major_topic | False |
| mesh[0].qualifier_name | |
| mesh[0].descriptor_name | Humans |
| mesh[1].qualifier_ui | |
| mesh[1].descriptor_ui | D007963 |
| mesh[1].is_major_topic | True |
| mesh[1].qualifier_name | |
| mesh[1].descriptor_name | Leukocytes, Mononuclear |
| mesh[2].qualifier_ui | Q000379 |
| mesh[2].descriptor_ui | D059010 |
| mesh[2].is_major_topic | True |
| mesh[2].qualifier_name | methods |
| mesh[2].descriptor_name | Single-Cell Analysis |
| mesh[3].qualifier_ui | Q000379 |
| mesh[3].descriptor_ui | D020869 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | methods |
| mesh[3].descriptor_name | Gene Expression Profiling |
| mesh[4].qualifier_ui | |
| mesh[4].descriptor_ui | D016000 |
| mesh[4].is_major_topic | False |
| mesh[4].qualifier_name | |
| mesh[4].descriptor_name | Cluster Analysis |
| mesh[5].qualifier_ui | |
| mesh[5].descriptor_ui | D006801 |
| mesh[5].is_major_topic | False |
| mesh[5].qualifier_name | |
| mesh[5].descriptor_name | Humans |
| mesh[6].qualifier_ui | |
| mesh[6].descriptor_ui | D007963 |
| mesh[6].is_major_topic | True |
| mesh[6].qualifier_name | |
| mesh[6].descriptor_name | Leukocytes, Mononuclear |
| mesh[7].qualifier_ui | Q000379 |
| mesh[7].descriptor_ui | D059010 |
| mesh[7].is_major_topic | True |
| mesh[7].qualifier_name | methods |
| mesh[7].descriptor_name | Single-Cell Analysis |
| mesh[8].qualifier_ui | Q000379 |
| mesh[8].descriptor_ui | D020869 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | methods |
| mesh[8].descriptor_name | Gene Expression Profiling |
| mesh[9].qualifier_ui | |
| mesh[9].descriptor_ui | D016000 |
| mesh[9].is_major_topic | False |
| mesh[9].qualifier_name | |
| mesh[9].descriptor_name | Cluster Analysis |
| mesh[10].qualifier_ui | |
| mesh[10].descriptor_ui | D006801 |
| mesh[10].is_major_topic | False |
| mesh[10].qualifier_name | |
| mesh[10].descriptor_name | Humans |
| mesh[11].qualifier_ui | |
| mesh[11].descriptor_ui | D007963 |
| mesh[11].is_major_topic | True |
| mesh[11].qualifier_name | |
| mesh[11].descriptor_name | Leukocytes, Mononuclear |
| mesh[12].qualifier_ui | Q000379 |
| mesh[12].descriptor_ui | D059010 |
| mesh[12].is_major_topic | True |
| mesh[12].qualifier_name | methods |
| mesh[12].descriptor_name | Single-Cell Analysis |
| mesh[13].qualifier_ui | Q000379 |
| mesh[13].descriptor_ui | D020869 |
| mesh[13].is_major_topic | False |
| mesh[13].qualifier_name | methods |
| mesh[13].descriptor_name | Gene Expression Profiling |
| mesh[14].qualifier_ui | |
| mesh[14].descriptor_ui | D016000 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | |
| mesh[14].descriptor_name | Cluster Analysis |
| mesh[15].qualifier_ui | |
| mesh[15].descriptor_ui | D006801 |
| mesh[15].is_major_topic | False |
| mesh[15].qualifier_name | |
| mesh[15].descriptor_name | Humans |
| mesh[16].qualifier_ui | |
| mesh[16].descriptor_ui | D007963 |
| mesh[16].is_major_topic | True |
| mesh[16].qualifier_name | |
| mesh[16].descriptor_name | Leukocytes, Mononuclear |
| mesh[17].qualifier_ui | Q000379 |
| mesh[17].descriptor_ui | D059010 |
| mesh[17].is_major_topic | True |
| mesh[17].qualifier_name | methods |
| mesh[17].descriptor_name | Single-Cell Analysis |
| mesh[18].qualifier_ui | Q000379 |
| mesh[18].descriptor_ui | D020869 |
| mesh[18].is_major_topic | False |
| mesh[18].qualifier_name | methods |
| mesh[18].descriptor_name | Gene Expression Profiling |
| mesh[19].qualifier_ui | |
| mesh[19].descriptor_ui | D016000 |
| mesh[19].is_major_topic | False |
| mesh[19].qualifier_name | |
| mesh[19].descriptor_name | Cluster Analysis |
| mesh[20].qualifier_ui | |
| mesh[20].descriptor_ui | D006801 |
| mesh[20].is_major_topic | False |
| mesh[20].qualifier_name | |
| mesh[20].descriptor_name | Humans |
| mesh[21].qualifier_ui | |
| mesh[21].descriptor_ui | D007963 |
| mesh[21].is_major_topic | True |
| mesh[21].qualifier_name | |
| mesh[21].descriptor_name | Leukocytes, Mononuclear |
| mesh[22].qualifier_ui | Q000379 |
| mesh[22].descriptor_ui | D059010 |
| mesh[22].is_major_topic | True |
| mesh[22].qualifier_name | methods |
| mesh[22].descriptor_name | Single-Cell Analysis |
| mesh[23].qualifier_ui | Q000379 |
| mesh[23].descriptor_ui | D020869 |
| mesh[23].is_major_topic | False |
| mesh[23].qualifier_name | methods |
| mesh[23].descriptor_name | Gene Expression Profiling |
| mesh[24].qualifier_ui | |
| mesh[24].descriptor_ui | D016000 |
| mesh[24].is_major_topic | False |
| mesh[24].qualifier_name | |
| mesh[24].descriptor_name | Cluster Analysis |
| mesh[25].qualifier_ui | |
| mesh[25].descriptor_ui | D006801 |
| mesh[25].is_major_topic | False |
| mesh[25].qualifier_name | |
| mesh[25].descriptor_name | Humans |
| mesh[26].qualifier_ui | |
| mesh[26].descriptor_ui | D007963 |
| mesh[26].is_major_topic | True |
| mesh[26].qualifier_name | |
| mesh[26].descriptor_name | Leukocytes, Mononuclear |
| mesh[27].qualifier_ui | Q000379 |
| mesh[27].descriptor_ui | D059010 |
| mesh[27].is_major_topic | True |
| mesh[27].qualifier_name | methods |
| mesh[27].descriptor_name | Single-Cell Analysis |
| mesh[28].qualifier_ui | Q000379 |
| mesh[28].descriptor_ui | D020869 |
| mesh[28].is_major_topic | False |
| mesh[28].qualifier_name | methods |
| mesh[28].descriptor_name | Gene Expression Profiling |
| mesh[29].qualifier_ui | |
| mesh[29].descriptor_ui | D016000 |
| mesh[29].is_major_topic | False |
| mesh[29].qualifier_name | |
| mesh[29].descriptor_name | Cluster Analysis |
| mesh[30].qualifier_ui | |
| mesh[30].descriptor_ui | D006801 |
| mesh[30].is_major_topic | False |
| mesh[30].qualifier_name | |
| mesh[30].descriptor_name | Humans |
| mesh[31].qualifier_ui | |
| mesh[31].descriptor_ui | D007963 |
| mesh[31].is_major_topic | True |
| mesh[31].qualifier_name | |
| mesh[31].descriptor_name | Leukocytes, Mononuclear |
| mesh[32].qualifier_ui | Q000379 |
| mesh[32].descriptor_ui | D059010 |
| mesh[32].is_major_topic | True |
| mesh[32].qualifier_name | methods |
| mesh[32].descriptor_name | Single-Cell Analysis |
| mesh[33].qualifier_ui | Q000379 |
| mesh[33].descriptor_ui | D020869 |
| mesh[33].is_major_topic | False |
| mesh[33].qualifier_name | methods |
| mesh[33].descriptor_name | Gene Expression Profiling |
| mesh[34].qualifier_ui | |
| mesh[34].descriptor_ui | D016000 |
| mesh[34].is_major_topic | False |
| mesh[34].qualifier_name | |
| mesh[34].descriptor_name | Cluster Analysis |
| type | article |
| title | q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomics |
| awards[0].id | https://openalex.org/G2824684834 |
| awards[0].funder_id | https://openalex.org/F4320332180 |
| awards[0].display_name | |
| awards[0].funder_award_id | W911NF-21-C-0002 |
| awards[0].funder_display_name | Defense Advanced Research Projects Agency |
| awards[1].id | https://openalex.org/G8149995252 |
| awards[1].funder_id | https://openalex.org/F4320337351 |
| awards[1].display_name | |
| awards[1].funder_award_id | P30CA014089, UG1CA180830 |
| awards[1].funder_display_name | National Cancer Institute |
| biblio.issue | 1 |
| biblio.volume | 7 |
| biblio.last_page | 400 |
| biblio.first_page | 400 |
| topics[0].id | https://openalex.org/T11289 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 1.0 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | Single-cell and spatial transcriptomics |
| topics[1].id | https://openalex.org/T10515 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.9901000261306763 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1306 |
| topics[1].subfield.display_name | Cancer Research |
| topics[1].display_name | Cancer-related molecular mechanisms research |
| topics[2].id | https://openalex.org/T10604 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9801999926567078 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1312 |
| topics[2].subfield.display_name | Molecular Biology |
| topics[2].display_name | RNA Research and Splicing |
| funders[0].id | https://openalex.org/F4320332180 |
| funders[0].ror | https://ror.org/02caytj08 |
| funders[0].display_name | Defense Advanced Research Projects Agency |
| funders[1].id | https://openalex.org/F4320337351 |
| funders[1].ror | https://ror.org/040gcmg81 |
| funders[1].display_name | National Cancer Institute |
| is_xpac | False |
| apc_list.value | 2680 |
| apc_list.currency | EUR |
| apc_list.value_usd | 2890 |
| apc_paid.value | 2680 |
| apc_paid.currency | EUR |
| apc_paid.value_usd | 2890 |
| concepts[0].id | https://openalex.org/C41008148 |
| concepts[0].level | 0 |
| concepts[0].score | 0.6186119318008423 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[0].display_name | Computer science |
| concepts[1].id | https://openalex.org/C111030470 |
| concepts[1].level | 2 |
| concepts[1].score | 0.6072429418563843 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q1430460 |
| concepts[1].display_name | Curse of dimensionality |
| concepts[2].id | https://openalex.org/C70721500 |
| concepts[2].level | 1 |
| concepts[2].score | 0.5583977699279785 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q177005 |
| concepts[2].display_name | Computational biology |
| concepts[3].id | https://openalex.org/C149550507 |
| concepts[3].level | 3 |
| concepts[3].score | 0.5458049178123474 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q899360 |
| concepts[3].display_name | Diffusion MRI |
| concepts[4].id | https://openalex.org/C89600930 |
| concepts[4].level | 2 |
| concepts[4].score | 0.45724889636039734 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q1423946 |
| concepts[4].display_name | Segmentation |
| concepts[5].id | https://openalex.org/C154945302 |
| concepts[5].level | 1 |
| concepts[5].score | 0.45467859506607056 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[5].display_name | Artificial intelligence |
| concepts[6].id | https://openalex.org/C69357855 |
| concepts[6].level | 2 |
| concepts[6].score | 0.4520244598388672 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q163214 |
| concepts[6].display_name | Diffusion |
| concepts[7].id | https://openalex.org/C73555534 |
| concepts[7].level | 2 |
| concepts[7].score | 0.4237246513366699 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q622825 |
| concepts[7].display_name | Cluster analysis |
| concepts[8].id | https://openalex.org/C60644358 |
| concepts[8].level | 1 |
| concepts[8].score | 0.33289405703544617 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q128570 |
| concepts[8].display_name | Bioinformatics |
| concepts[9].id | https://openalex.org/C124101348 |
| concepts[9].level | 1 |
| concepts[9].score | 0.3317292034626007 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q172491 |
| concepts[9].display_name | Data mining |
| concepts[10].id | https://openalex.org/C86803240 |
| concepts[10].level | 0 |
| concepts[10].score | 0.28306281566619873 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[10].display_name | Biology |
| concepts[11].id | https://openalex.org/C71924100 |
| concepts[11].level | 0 |
| concepts[11].score | 0.21577051281929016 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q11190 |
| concepts[11].display_name | Medicine |
| concepts[12].id | https://openalex.org/C121332964 |
| concepts[12].level | 0 |
| concepts[12].score | 0.1360049843788147 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q413 |
| concepts[12].display_name | Physics |
| concepts[13].id | https://openalex.org/C143409427 |
| concepts[13].level | 2 |
| concepts[13].score | 0.08970144391059875 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q161238 |
| concepts[13].display_name | Magnetic resonance imaging |
| concepts[14].id | https://openalex.org/C126838900 |
| concepts[14].level | 1 |
| concepts[14].score | 0.0 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q77604 |
| concepts[14].display_name | Radiology |
| concepts[15].id | https://openalex.org/C97355855 |
| concepts[15].level | 1 |
| concepts[15].score | 0.0 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q11473 |
| concepts[15].display_name | Thermodynamics |
| keywords[0].id | https://openalex.org/keywords/computer-science |
| keywords[0].score | 0.6186119318008423 |
| keywords[0].display_name | Computer science |
| keywords[1].id | https://openalex.org/keywords/curse-of-dimensionality |
| keywords[1].score | 0.6072429418563843 |
| keywords[1].display_name | Curse of dimensionality |
| keywords[2].id | https://openalex.org/keywords/computational-biology |
| keywords[2].score | 0.5583977699279785 |
| keywords[2].display_name | Computational biology |
| keywords[3].id | https://openalex.org/keywords/diffusion-mri |
| keywords[3].score | 0.5458049178123474 |
| keywords[3].display_name | Diffusion MRI |
| keywords[4].id | https://openalex.org/keywords/segmentation |
| keywords[4].score | 0.45724889636039734 |
| keywords[4].display_name | Segmentation |
| keywords[5].id | https://openalex.org/keywords/artificial-intelligence |
| keywords[5].score | 0.45467859506607056 |
| keywords[5].display_name | Artificial intelligence |
| keywords[6].id | https://openalex.org/keywords/diffusion |
| keywords[6].score | 0.4520244598388672 |
| keywords[6].display_name | Diffusion |
| keywords[7].id | https://openalex.org/keywords/cluster-analysis |
| keywords[7].score | 0.4237246513366699 |
| keywords[7].display_name | Cluster analysis |
| keywords[8].id | https://openalex.org/keywords/bioinformatics |
| keywords[8].score | 0.33289405703544617 |
| keywords[8].display_name | Bioinformatics |
| keywords[9].id | https://openalex.org/keywords/data-mining |
| keywords[9].score | 0.3317292034626007 |
| keywords[9].display_name | Data mining |
| keywords[10].id | https://openalex.org/keywords/biology |
| keywords[10].score | 0.28306281566619873 |
| keywords[10].display_name | Biology |
| keywords[11].id | https://openalex.org/keywords/medicine |
| keywords[11].score | 0.21577051281929016 |
| keywords[11].display_name | Medicine |
| keywords[12].id | https://openalex.org/keywords/physics |
| keywords[12].score | 0.1360049843788147 |
| keywords[12].display_name | Physics |
| keywords[13].id | https://openalex.org/keywords/magnetic-resonance-imaging |
| keywords[13].score | 0.08970144391059875 |
| keywords[13].display_name | Magnetic resonance imaging |
| language | en |
| locations[0].id | doi:10.1038/s42003-024-06104-w |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S4210225776 |
| locations[0].source.issn | 2399-3642 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 2399-3642 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | Communications Biology |
| locations[0].source.host_organization | https://openalex.org/P4310319908 |
| locations[0].source.host_organization_name | Nature Portfolio |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310319908, https://openalex.org/P4310319965 |
| locations[0].source.host_organization_lineage_names | Nature Portfolio, Springer Nature |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://www.nature.com/articles/s42003-024-06104-w.pdf |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | Communications Biology |
| locations[0].landing_page_url | https://doi.org/10.1038/s42003-024-06104-w |
| locations[1].id | pmid:38565955 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Communications biology |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/38565955 |
| locations[2].id | pmh:oai:doaj.org/article:c2441917cb8e405bbe7b4eb1101de755 |
| locations[2].is_oa | False |
| locations[2].source.id | https://openalex.org/S4306401280 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[2].source.host_organization | |
| locations[2].source.host_organization_name | |
| locations[2].license | |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | article |
| locations[2].license_id | |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | Communications Biology, Vol 7, Iss 1, Pp 1-14 (2024) |
| locations[2].landing_page_url | https://doaj.org/article/c2441917cb8e405bbe7b4eb1101de755 |
| locations[3].id | pmh:oai:pubmedcentral.nih.gov:11255321 |
| locations[3].is_oa | True |
| locations[3].source.id | https://openalex.org/S2764455111 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | PubMed Central |
| locations[3].source.host_organization | https://openalex.org/I1299303238 |
| locations[3].source.host_organization_name | National Institutes of Health |
| locations[3].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[3].license | other-oa |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | Text |
| locations[3].license_id | https://openalex.org/licenses/other-oa |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | Commun Biol |
| locations[3].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/11255321 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5071949195 |
| authorships[0].author.orcid | https://orcid.org/0000-0001-8742-7848 |
| authorships[0].author.display_name | Myrl G. Marmarelis |
| authorships[0].countries | US |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I1174212 |
| authorships[0].affiliations[0].raw_affiliation_string | Information Sciences Institute, University of Southern California, 4676 Admiralty Way, Marina del Rey, CA, 90292, USA |
| authorships[0].institutions[0].id | https://openalex.org/I1174212 |
| authorships[0].institutions[0].ror | https://ror.org/03taz7m60 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I1174212 |
| authorships[0].institutions[0].country_code | US |
| authorships[0].institutions[0].display_name | University of Southern California |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Myrl G. Marmarelis |
| authorships[0].is_corresponding | True |
| authorships[0].raw_affiliation_strings | Information Sciences Institute, University of Southern California, 4676 Admiralty Way, Marina del Rey, CA, 90292, USA |
| authorships[1].author.id | https://openalex.org/A5044758163 |
| authorships[1].author.orcid | https://orcid.org/0000-0002-6790-312X |
| authorships[1].author.display_name | Russell Littman |
| authorships[1].countries | US |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I161318765 |
| authorships[1].affiliations[0].raw_affiliation_string | University of California Los Angeles, Los Angeles, CA, 90095, USA |
| authorships[1].institutions[0].id | https://openalex.org/I161318765 |
| authorships[1].institutions[0].ror | https://ror.org/046rm7j60 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I161318765 |
| authorships[1].institutions[0].country_code | US |
| authorships[1].institutions[0].display_name | University of California, Los Angeles |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Russell Littman |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | University of California Los Angeles, Los Angeles, CA, 90095, USA |
| authorships[2].author.id | https://openalex.org/A5021631368 |
| authorships[2].author.orcid | https://orcid.org/0000-0002-9869-0163 |
| authorships[2].author.display_name | Francesca Battaglin |
| authorships[2].countries | US |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I1174212 |
| authorships[2].affiliations[0].raw_affiliation_string | Keck School of Medicine, University of Southern California, 1975 Zonal Ave., Los Angeles, CA, 90033, USA |
| authorships[2].institutions[0].id | https://openalex.org/I1174212 |
| authorships[2].institutions[0].ror | https://ror.org/03taz7m60 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I1174212 |
| authorships[2].institutions[0].country_code | US |
| authorships[2].institutions[0].display_name | University of Southern California |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Francesca Battaglin |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Keck School of Medicine, University of Southern California, 1975 Zonal Ave., Los Angeles, CA, 90033, USA |
| authorships[3].author.id | https://openalex.org/A5073130519 |
| authorships[3].author.orcid | https://orcid.org/0000-0002-3566-0450 |
| authorships[3].author.display_name | Donna Niedzwiecki |
| authorships[3].countries | US |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I170897317 |
| authorships[3].affiliations[0].raw_affiliation_string | Duke University, Durham, NC, 27708, USA |
| authorships[3].institutions[0].id | https://openalex.org/I170897317 |
| authorships[3].institutions[0].ror | https://ror.org/00py81415 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I170897317 |
| authorships[3].institutions[0].country_code | US |
| authorships[3].institutions[0].display_name | Duke University |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Donna Niedzwiecki |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Duke University, Durham, NC, 27708, USA |
| authorships[4].author.id | https://openalex.org/A5037875642 |
| authorships[4].author.orcid | https://orcid.org/0000-0001-9749-6548 |
| authorships[4].author.display_name | Alan P. Venook |
| authorships[4].countries | US |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I180670191 |
| authorships[4].affiliations[0].raw_affiliation_string | University of California San Francisco, San Francisco, CA, 94143, USA |
| authorships[4].institutions[0].id | https://openalex.org/I180670191 |
| authorships[4].institutions[0].ror | https://ror.org/043mz5j54 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I180670191 |
| authorships[4].institutions[0].country_code | US |
| authorships[4].institutions[0].display_name | University of California, San Francisco |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Alan Venook |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | University of California San Francisco, San Francisco, CA, 94143, USA |
| authorships[5].author.id | https://openalex.org/A5033175043 |
| authorships[5].author.orcid | https://orcid.org/0000-0003-0087-080X |
| authorships[5].author.display_name | José Luis Ambite |
| authorships[5].countries | US |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I1174212 |
| authorships[5].affiliations[0].raw_affiliation_string | Information Sciences Institute, University of Southern California, 4676 Admiralty Way, Marina del Rey, CA, 90292, USA |
| authorships[5].institutions[0].id | https://openalex.org/I1174212 |
| authorships[5].institutions[0].ror | https://ror.org/03taz7m60 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I1174212 |
| authorships[5].institutions[0].country_code | US |
| authorships[5].institutions[0].display_name | University of Southern California |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Jose-Luis Ambite |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Information Sciences Institute, University of Southern California, 4676 Admiralty Way, Marina del Rey, CA, 90292, USA |
| authorships[6].author.id | https://openalex.org/A5101715504 |
| authorships[6].author.orcid | https://orcid.org/0000-0003-4215-0886 |
| authorships[6].author.display_name | Aram Galstyan |
| authorships[6].countries | US |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I1174212 |
| authorships[6].affiliations[0].raw_affiliation_string | Information Sciences Institute, University of Southern California, 4676 Admiralty Way, Marina del Rey, CA, 90292, USA |
| authorships[6].institutions[0].id | https://openalex.org/I1174212 |
| authorships[6].institutions[0].ror | https://ror.org/03taz7m60 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I1174212 |
| authorships[6].institutions[0].country_code | US |
| authorships[6].institutions[0].display_name | University of Southern California |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | Aram Galstyan |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Information Sciences Institute, University of Southern California, 4676 Admiralty Way, Marina del Rey, CA, 90292, USA |
| authorships[7].author.id | https://openalex.org/A5045441776 |
| authorships[7].author.orcid | https://orcid.org/0000-0003-2178-9568 |
| authorships[7].author.display_name | Heinz‐Josef Lenz |
| authorships[7].countries | US |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I1174212 |
| authorships[7].affiliations[0].raw_affiliation_string | Keck School of Medicine, University of Southern California, 1975 Zonal Ave., Los Angeles, CA, 90033, USA |
| authorships[7].institutions[0].id | https://openalex.org/I1174212 |
| authorships[7].institutions[0].ror | https://ror.org/03taz7m60 |
| authorships[7].institutions[0].type | education |
| authorships[7].institutions[0].lineage | https://openalex.org/I1174212 |
| authorships[7].institutions[0].country_code | US |
| authorships[7].institutions[0].display_name | University of Southern California |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Heinz-Josef Lenz |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | Keck School of Medicine, University of Southern California, 1975 Zonal Ave., Los Angeles, CA, 90033, USA |
| authorships[8].author.id | https://openalex.org/A5075920466 |
| authorships[8].author.orcid | https://orcid.org/0000-0002-0793-141X |
| authorships[8].author.display_name | Greg Ver Steeg |
| authorships[8].countries | US |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I103635307 |
| authorships[8].affiliations[0].raw_affiliation_string | University of California Riverside, Riverside, CA, 92521, USA |
| authorships[8].institutions[0].id | https://openalex.org/I103635307 |
| authorships[8].institutions[0].ror | https://ror.org/03nawhv43 |
| authorships[8].institutions[0].type | education |
| authorships[8].institutions[0].lineage | https://openalex.org/I103635307 |
| authorships[8].institutions[0].country_code | US |
| authorships[8].institutions[0].display_name | University of California, Riverside |
| authorships[8].author_position | last |
| authorships[8].raw_author_name | Greg Ver Steeg |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | University of California Riverside, Riverside, CA, 92521, USA |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://www.nature.com/articles/s42003-024-06104-w.pdf |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomics |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T11289 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 1.0 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | Single-cell and spatial transcriptomics |
| related_works | https://openalex.org/W4296209631, https://openalex.org/W3097449145, https://openalex.org/W2561617217, https://openalex.org/W4294811468, https://openalex.org/W2355801475, https://openalex.org/W4206659427, https://openalex.org/W2170062176, https://openalex.org/W4298130764, https://openalex.org/W2148135840, https://openalex.org/W106004901 |
| cited_by_count | 1 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 1 |
| locations_count | 4 |
| best_oa_location.id | doi:10.1038/s42003-024-06104-w |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S4210225776 |
| best_oa_location.source.issn | 2399-3642 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 2399-3642 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | Communications Biology |
| best_oa_location.source.host_organization | https://openalex.org/P4310319908 |
| best_oa_location.source.host_organization_name | Nature Portfolio |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310319908, https://openalex.org/P4310319965 |
| best_oa_location.source.host_organization_lineage_names | Nature Portfolio, Springer Nature |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://www.nature.com/articles/s42003-024-06104-w.pdf |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | Communications Biology |
| best_oa_location.landing_page_url | https://doi.org/10.1038/s42003-024-06104-w |
| primary_location.id | doi:10.1038/s42003-024-06104-w |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S4210225776 |
| primary_location.source.issn | 2399-3642 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 2399-3642 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | Communications Biology |
| primary_location.source.host_organization | https://openalex.org/P4310319908 |
| primary_location.source.host_organization_name | Nature Portfolio |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310319908, https://openalex.org/P4310319965 |
| primary_location.source.host_organization_lineage_names | Nature Portfolio, Springer Nature |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://www.nature.com/articles/s42003-024-06104-w.pdf |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | Communications Biology |
| primary_location.landing_page_url | https://doi.org/10.1038/s42003-024-06104-w |
| publication_date | 2024-04-02 |
| publication_year | 2024 |
| referenced_works | https://openalex.org/W3080880059, https://openalex.org/W2903770906, https://openalex.org/W3120342826, https://openalex.org/W3005127469, https://openalex.org/W3129725981, https://openalex.org/W2949177718, https://openalex.org/W2794480084, https://openalex.org/W2747877289, https://openalex.org/W2800392236, https://openalex.org/W2942610007, https://openalex.org/W2973017325, https://openalex.org/W3041823250, https://openalex.org/W2993894543, https://openalex.org/W3192425214, https://openalex.org/W3193419934, https://openalex.org/W2712978371, https://openalex.org/W4212992366, https://openalex.org/W2069788322, https://openalex.org/W3015306478, https://openalex.org/W2986467495, https://openalex.org/W2123636561, https://openalex.org/W2958554910, https://openalex.org/W4283804602, https://openalex.org/W4293241248, https://openalex.org/W2884197618, https://openalex.org/W2774307122, https://openalex.org/W4289988756, https://openalex.org/W2890576444, https://openalex.org/W4235169531, https://openalex.org/W3185008666, https://openalex.org/W4280517823, https://openalex.org/W2901677030, https://openalex.org/W2917101543, https://openalex.org/W4302010984, https://openalex.org/W2938910572, https://openalex.org/W3119379269, https://openalex.org/W4283718372, https://openalex.org/W3203364159, https://openalex.org/W3043793790, https://openalex.org/W2016381774, https://openalex.org/W1987971958, https://openalex.org/W2965472158, https://openalex.org/W4225981439, https://openalex.org/W2911279170, https://openalex.org/W6828973760, https://openalex.org/W4210832122, https://openalex.org/W4308444833, https://openalex.org/W4200138119, https://openalex.org/W4309166643, https://openalex.org/W2888562574, https://openalex.org/W4220808079, https://openalex.org/W2523419694, https://openalex.org/W3016974908, https://openalex.org/W2899235059, https://openalex.org/W4224218779, https://openalex.org/W3119774682, https://openalex.org/W4200477198, https://openalex.org/W3102239735, https://openalex.org/W4297251628, https://openalex.org/W2899615648, https://openalex.org/W2603756957, https://openalex.org/W3124749091, https://openalex.org/W3202521679, https://openalex.org/W4306194402, https://openalex.org/W3197670201, https://openalex.org/W3194560548, https://openalex.org/W3147894994, https://openalex.org/W1986705681, https://openalex.org/W2067342226, https://openalex.org/W2108819945, https://openalex.org/W4200136954, https://openalex.org/W1837170756, https://openalex.org/W2910124299, https://openalex.org/W4210263666, https://openalex.org/W4221068576, https://openalex.org/W2598326928, https://openalex.org/W2108119513, https://openalex.org/W4385945347, https://openalex.org/W4280598116, https://openalex.org/W3106188259, https://openalex.org/W4233637541, https://openalex.org/W3102719377, https://openalex.org/W4224030682, https://openalex.org/W2554140069, https://openalex.org/W3035182494, https://openalex.org/W4226481820, https://openalex.org/W2911822431, https://openalex.org/W3171488579 |
| referenced_works_count | 88 |
| abstract_inverted_index | |
| cited_by_percentile_year.max | 95 |
| cited_by_percentile_year.min | 91 |
| corresponding_author_ids | https://openalex.org/A5071949195 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 9 |
| corresponding_institution_ids | https://openalex.org/I1174212 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/10 |
| sustainable_development_goals[0].score | 0.6299999952316284 |
| sustainable_development_goals[0].display_name | Reduced inequalities |
| citation_normalized_percentile.value | 0.57098047 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |