QTL mapping and genomic selection of stem and branch diameter in soybean (Glycine max L.) Article Swipe
Jing Wang
,
Qichao Yang
,
Yijie Chen
,
Kanglin Liu
,
Andy Zhang
,
Yajun Xiong
,
Huan Yu
,
Yingdong Yu
,
Jun Wang
,
Jian Song
,
Lijuan Qiu
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.3389/fpls.2024.1388365
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.3389/fpls.2024.1388365
Introduction Soybean stem diameter (SD) and branch diameter (BD) are closely related traits, and genetic clarification of SD and BD is crucial for soybean breeding. Methods SD and BD were genetically analyzed by a population of 363 RIL derived from the cross between Zhongdou41 (ZD41) and ZYD02878 using restricted two-stage multi-locus genome-wide association, inclusive composite interval mapping, and three-variance component multi-locus random SNP effect mixed linear modeling. Then candidate genes of major QTLs were selected and genetic selection model of SD and BD were constructed respectively. Results and discussion The results showed that SD and BD were significantly correlated (r = 0.74, P < 0.001). A total of 93 and 84 unique quantitative trait loci (QTL) were detected for SD and BD, respectively by three different methods. There were two and ten major QTLs for SD and BD, respectively, with phenotypic variance explained (PVE) by more than 10%. Within these loci, seven genes involved in the regulation of phytohormones (IAA and GA) and cell proliferation and showing extensive expression of shoot apical meristematic genes were selected as candidate genes. Genomic selection (GS) analysis showed that the trait-associated markers identified in this study reached 0.47-0.73 in terms of prediction accuracy, which was enhanced by 6.56-23.69% compared with genome-wide markers. These results clarify the genetic basis of SD and BD, which laid solid foundation in regulation gene cloning, and GS models constructed could be potentially applied in future breeding programs.
Related Topics
Concepts
Quantitative trait locus
Biology
Genetics
Candidate gene
Locus (genetics)
Gene
Population
Genome
Positional cloning
Sociology
Demography
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3389/fpls.2024.1388365
- https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1388365/pdf
- OA Status
- gold
- Cited By
- 4
- References
- 47
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4399246202
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4399246202Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.3389/fpls.2024.1388365Digital Object Identifier
- Title
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QTL mapping and genomic selection of stem and branch diameter in soybean (Glycine max L.)Work title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
-
2024-05-31Full publication date if available
- Authors
-
Jing Wang, Qichao Yang, Yijie Chen, Kanglin Liu, Andy Zhang, Yajun Xiong, Huan Yu, Yingdong Yu, Jun Wang, Jian Song, Lijuan QiuList of authors in order
- Landing page
-
https://doi.org/10.3389/fpls.2024.1388365Publisher landing page
- PDF URL
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https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1388365/pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1388365/pdfDirect OA link when available
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Quantitative trait locus, Biology, Genetics, Candidate gene, Locus (genetics), Gene, Population, Genome, Positional cloning, Sociology, DemographyTop concepts (fields/topics) attached by OpenAlex
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4Total citation count in OpenAlex
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2025: 4Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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