Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry Article Swipe
Peter Rubbens
,
Marian L. Schmidt
,
Ruben Props
,
Bopaiah A. Biddanda
,
Nico Boon
,
Willem Waegeman
,
Vincent J. Denef
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1128/msystems.00093-19
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1128/msystems.00093-19
A major goal in microbial ecology is to understand how microbial community structure influences ecosystem functioning. Various methods to directly associate bacterial taxa to functional groups in the environment are being developed. In this study, we applied machine learning methods to relate taxonomic data obtained from marker gene surveys to functional groups identified by flow cytometry. This allowed us to identify the taxa that are associated with heterotrophic productivity in freshwater lakes and indicated that the key contributors were highly system specific, regularly rare members of the community, and that some could possibly switch between being low and high contributors. Our approach provides a promising framework to identify taxa that contribute to ecosystem functioning and can be further developed to explore microbial contributions beyond heterotrophic production.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1128/msystems.00093-19
- OA Status
- gold
- Cited By
- 28
- References
- 99
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2973117714
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2973117714Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1128/msystems.00093-19Digital Object Identifier
- Title
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Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow CytometryWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2019Year of publication
- Publication date
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2019-09-09Full publication date if available
- Authors
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Peter Rubbens, Marian L. Schmidt, Ruben Props, Bopaiah A. Biddanda, Nico Boon, Willem Waegeman, Vincent J. DenefList of authors in order
- Landing page
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https://doi.org/10.1128/msystems.00093-19Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
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https://doi.org/10.1128/msystems.00093-19Direct OA link when available
- Concepts
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Taxon, Ecology, Biology, Ecosystem, Heterotroph, Microbial population biology, Microbial ecology, Aquatic ecosystem, Bacteria, GeneticsTop concepts (fields/topics) attached by OpenAlex
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28Total citation count in OpenAlex
- Citations by year (recent)
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2025: 1, 2024: 12, 2023: 1, 2022: 3, 2021: 6Per-year citation counts (last 5 years)
- References (count)
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99Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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