RNAtango: Analysing and comparing RNA 3D structures via torsional angles Article Swipe
Marta Mackowiak
,
Bartosz Adamczyk
,
Marta Szachniuk
,
Tomasz Żok
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1371/journal.pcbi.1012500
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1371/journal.pcbi.1012500
RNA molecules, essential for viruses and living organisms, derive their pivotal functions from intricate 3D structures. To understand these structures, one can analyze torsion and pseudo-torsion angles, which describe rotations around bonds, whether real or virtual, thus capturing the RNA conformational flexibility. Such an analysis has been made possible by RNAtango, a web server introduced in this paper, that provides a trigonometric perspective on RNA 3D structures, giving insights into the variability of examined models and their alignment with reference targets. RNAtango offers comprehensive tools for calculating torsion and pseudo-torsion angles, generating angle statistics, comparing RNA structures based on backbone torsions, and assessing local and global structural similarities using trigonometric functions and angle measures. The system operates in three scenarios: single model analysis, model-versus-target comparison, and model-versus-model comparison, with results output in text and graphical formats. Compatible with all modern web browsers, RNAtango is accessible freely along with the source code. It supports researchers in accurately assessing structural similarities, which contributes to the precision and efficiency of RNA modeling.
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- article
- Language
- en
- Landing Page
- https://doi.org/10.1371/journal.pcbi.1012500
- OA Status
- gold
- Cited By
- 5
- References
- 52
- Related Works
- 10
- OpenAlex ID
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All OpenAlex metadata
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https://openalex.org/W4403172808Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1371/journal.pcbi.1012500Digital Object Identifier
- Title
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RNAtango: Analysing and comparing RNA 3D structures via torsional anglesWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-10-07Full publication date if available
- Authors
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Marta Mackowiak, Bartosz Adamczyk, Marta Szachniuk, Tomasz ŻokList of authors in order
- Landing page
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https://doi.org/10.1371/journal.pcbi.1012500Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
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https://doi.org/10.1371/journal.pcbi.1012500Direct OA link when available
- Concepts
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Trigonometry, Torsion (gastropod), Computer science, Trigonometric functions, RNA, Algorithm, Theoretical computer science, Source code, Software, Data mining, Biological system, Computational science, Mathematics, Geometry, Programming language, Biology, Biochemistry, Gene, ZoologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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5Total citation count in OpenAlex
- Citations by year (recent)
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2025: 5Per-year citation counts (last 5 years)
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52Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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