SARS-CoV-2 Detection and Culture in Different Biological Specimens from Immunocompetent and Immunosuppressed COVID-19 Patients Infected with Two Different Viral Strains Article Swipe
Maria Cássia Mendes-Corrêa
,
Matias Chiarastelli Salomão
,
Fábio Ghilardi
,
Tânia Regina Tozetto‐Mendoza
,
Lucy Santos Villas-Boas
,
Anderson Vicente de Paula
,
Heuder Gustavo Oliveira Paião
,
Antônio Charlys da Costa
,
Fábio E. Leal
,
Andrea de Barros Coscelli Ferraz
,
Flavia Cristina da Silva Sales
,
Ingra Morales Claro
,
Noely Evangelista Ferreira
,
Geovana M. Pereira
,
Almir Ribeiro da Silva
,
Wilton Freire
,
Evelyn Patrícia Sánchez Espinoza
,
Erika R. Manuli
,
Camila Malta Romano
,
Jaqueline Góes de Jesus
,
Éster Cerdeira Sabino
,
Steven S. Witkin
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.3390/v15061270
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.3390/v15061270
Introduction—The dynamics of SARS-CoV-2 shedding and replication in humans remain incompletely understood. Methods—We analyzed SARS-CoV-2 shedding from multiple sites in individuals with an acute COVID-19 infection by weekly sampling for five weeks in 98 immunocompetent and 25 immunosuppressed individuals. Samples and culture supernatants were tested via RT-PCR for SARS-CoV-2 to determine viral clearance rates and in vitro replication. Results—A total of 2447 clinical specimens were evaluated, including 557 nasopharyngeal swabs, 527 saliva samples, 464 urine specimens, 437 anal swabs and 462 blood samples. The SARS-CoV-2 genome sequences at each site were classified as belonging to the B.1.128 (ancestral strain) or Gamma lineage. SARS-CoV-2 detection was highest in nasopharyngeal swabs regardless of the virus strain involved or the immune status of infected individuals. The duration of viral shedding varied between clinical specimens and individual patients. Prolonged shedding of potentially infectious virus varied from 10 days up to 191 days, and primarily occurred in immunosuppressed individuals. Virus was isolated in culture from 18 nasal swab or saliva samples collected 10 or more days after onset of disease. Conclusions—Our findings indicate that persistent SARS-CoV-2 shedding may occur in both competent or immunosuppressed individuals, at multiple clinical sites and in a minority of subjects is capable of in vitro replication.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/v15061270
- https://www.mdpi.com/1999-4915/15/6/1270/pdf?version=1685350479
- OA Status
- gold
- Cited By
- 9
- References
- 52
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4378650724
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4378650724Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3390/v15061270Digital Object Identifier
- Title
-
SARS-CoV-2 Detection and Culture in Different Biological Specimens from Immunocompetent and Immunosuppressed COVID-19 Patients Infected with Two Different Viral StrainsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-05-29Full publication date if available
- Authors
-
Maria Cássia Mendes-Corrêa, Matias Chiarastelli Salomão, Fábio Ghilardi, Tânia Regina Tozetto‐Mendoza, Lucy Santos Villas-Boas, Anderson Vicente de Paula, Heuder Gustavo Oliveira Paião, Antônio Charlys da Costa, Fábio E. Leal, Andrea de Barros Coscelli Ferraz, Flavia Cristina da Silva Sales, Ingra Morales Claro, Noely Evangelista Ferreira, Geovana M. Pereira, Almir Ribeiro da Silva, Wilton Freire, Evelyn Patrícia Sánchez Espinoza, Erika R. Manuli, Camila Malta Romano, Jaqueline Góes de Jesus, Éster Cerdeira Sabino, Steven S. WitkinList of authors in order
- Landing page
-
https://doi.org/10.3390/v15061270Publisher landing page
- PDF URL
-
https://www.mdpi.com/1999-4915/15/6/1270/pdf?version=1685350479Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
- OA URL
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https://www.mdpi.com/1999-4915/15/6/1270/pdf?version=1685350479Direct OA link when available
- Concepts
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Viral shedding, Saliva, Virology, Biology, Virus, Viral culture, Viral replication, Viral disease, Viral load, Immunology, BiochemistryTop concepts (fields/topics) attached by OpenAlex
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9Total citation count in OpenAlex
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2025: 2, 2024: 5, 2023: 2Per-year citation counts (last 5 years)
- References (count)
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52Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| corresponding_institution_ids | https://openalex.org/I17974374, https://openalex.org/I4210145268 |
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