Sequencing of Camelina neglecta, a diploid progenitor of the hexaploid oilseed Camelina sativa Article Swipe
Raju Chaudhary
,
ChuShin Koh
,
Sampath Perumal
,
Lingling Jin
,
Erin E. Higgins
,
Sateesh Kagale
,
Mark Smith
,
Andrew Sharpe
,
Isobel A. P. Parkin
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1111/pbi.13968
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1111/pbi.13968
Summary Camelina neglecta is a diploid species from the genus Camelina , which includes the versatile oilseed Camelina sativa . These species are closely related to Arabidopsis thaliana and the economically important Brassica crop species, making this genus a useful platform to dissect traits of agronomic importance while providing a tool to study the evolution of polyploids. A highly contiguous chromosome‐level genome sequence of C. neglecta with an N50 size of 29.1 Mb was generated utilizing Pacific Biosciences (PacBio, Menlo Park, CA) long‐read sequencing followed by chromosome conformation phasing. Comparison of the genome with that of C. sativa shows remarkable coincidence with subgenome 1 of the hexaploid, with only one major chromosomal rearrangement separating the two. Synonymous substitution rate analysis of the predicted 34 061 genes suggested subgenome 1 of C. sativa directly descended from C. neglecta around 1.2 mya. Higher functional divergence of genes in the hexaploid as evidenced by the greater number of unique orthogroups, and differential composition of resistant gene analogs, might suggest an immediate adaptation strategy after genome merger. The absence of genome bias in gene fractionation among the subgenomes of C. sativa in comparison with C. neglecta , and the complete lack of fractionation of meiosis‐specific genes attests to the neopolyploid status of C. sativa . The assembled genome will provide a tool to further study genome evolution processes in the Camelina genus and potentially allow for the identification and exploitation of novel variation for Camelina crop improvement.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1111/pbi.13968
- https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13968
- OA Status
- gold
- Cited By
- 13
- References
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- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4309366240
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4309366240Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1111/pbi.13968Digital Object Identifier
- Title
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Sequencing of Camelina neglecta, a diploid progenitor of the hexaploid oilseed Camelina sativaWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-11-18Full publication date if available
- Authors
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Raju Chaudhary, ChuShin Koh, Sampath Perumal, Lingling Jin, Erin E. Higgins, Sateesh Kagale, Mark Smith, Andrew Sharpe, Isobel A. P. ParkinList of authors in order
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https://doi.org/10.1111/pbi.13968Publisher landing page
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https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13968Direct link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/pbi.13968Direct OA link when available
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Camelina, Camelina sativa, Biology, Ploidy, Genome, Chromosome, Genetics, Gene, Crop, Biotechnology, EcologyTop concepts (fields/topics) attached by OpenAlex
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13Total citation count in OpenAlex
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2025: 3, 2024: 7, 2023: 3Per-year citation counts (last 5 years)
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94Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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