Single-nucleotide polymorphism identification and genotyping in Camelina sativa Article Swipe
Ravinder Singh
,
Venkatesh Bollina
,
Erin E. Higgins
,
Wayne E. Clarke
,
Christina Eynck
,
Christine Sidebottom
,
R. K. Gugel
,
Rod J. Snowdon
,
Isobel A. P. Parkin
·
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1007/s11032-015-0224-6
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1007/s11032-015-0224-6
Camelina sativa, a largely relict crop, has recently returned to interest due to its potential as an industrial oilseed. Molecular markers are key tools that will allow C. sativa to benefit from modern breeding approaches. Two complementary methodologies, capture of 3' cDNA tags and genomic reduced-representation libraries, both of which exploited second generation sequencing platforms, were used to develop a low density (768) Illumina GoldenGate single nucleotide polymorphism (SNP) array. The array allowed 533 SNP loci to be genetically mapped in a recombinant inbred population of C. sativa. Alignment of the SNP loci to the C. sativa genome identified the underlying sequenced regions that would delimit potential candidate genes in any mapping project. In addition, the SNP array was used to assess genetic variation among a collection of 175 accessions of C. sativa, identifying two sub-populations, yet low overall gene diversity. The SNP loci will provide useful tools for future crop improvement of C. sativa.
Related Topics
Concepts
Biology
Camelina sativa
Genetics
Single-nucleotide polymorphism
SNP genotyping
Molecular Inversion Probe
Genotyping
Oryza sativa
SNP array
SNP
dbSNP
Population
Molecular breeding
Genomics
Computational biology
Genome
Genotype
Gene
Crop
Agronomy
Demography
Sociology
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1007/s11032-015-0224-6
- https://link.springer.com/content/pdf/10.1007/s11032-015-0224-6.pdf
- OA Status
- hybrid
- Cited By
- 42
- References
- 40
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2027305723
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2027305723Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1007/s11032-015-0224-6Digital Object Identifier
- Title
-
Single-nucleotide polymorphism identification and genotyping in Camelina sativaWork title
- Type
-
articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2015Year of publication
- Publication date
-
2015-01-01Full publication date if available
- Authors
-
Ravinder Singh, Venkatesh Bollina, Erin E. Higgins, Wayne E. Clarke, Christina Eynck, Christine Sidebottom, R. K. Gugel, Rod J. Snowdon, Isobel A. P. ParkinList of authors in order
- Landing page
-
https://doi.org/10.1007/s11032-015-0224-6Publisher landing page
- PDF URL
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https://link.springer.com/content/pdf/10.1007/s11032-015-0224-6.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
hybridOpen access status per OpenAlex
- OA URL
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https://link.springer.com/content/pdf/10.1007/s11032-015-0224-6.pdfDirect OA link when available
- Concepts
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Biology, Camelina sativa, Genetics, Single-nucleotide polymorphism, SNP genotyping, Molecular Inversion Probe, Genotyping, Oryza sativa, SNP array, SNP, dbSNP, Population, Molecular breeding, Genomics, Computational biology, Genome, Genotype, Gene, Crop, Agronomy, Demography, SociologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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42Total citation count in OpenAlex
- Citations by year (recent)
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2025: 4, 2024: 1, 2023: 5, 2022: 6, 2021: 4Per-year citation counts (last 5 years)
- References (count)
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40Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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