Solving genomic puzzles: computational methods for metagenomic binning Article Swipe
Vijini Mallawaarachchi
,
Anuradha Wickramarachchi
,
Hansheng Xue
,
Bhavya Papudeshi
,
Susanna R. Grigson
,
George Bouras
,
Rosa E. Prahl
,
Anubhav Kaphle
,
Andrey Verich
,
Berenice Talamantes-Becerra
,
Elizabeth A. Dinsdale
,
Robert A. Edwards
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/bib/bbae372
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/bib/bbae372
Metagenomics involves the study of genetic material obtained directly from communities of microorganisms living in natural environments. The field of metagenomics has provided valuable insights into the structure, diversity and ecology of microbial communities. Once an environmental sample is sequenced and processed, metagenomic binning clusters the sequences into bins representing different taxonomic groups such as species, genera, or higher levels. Several computational tools have been developed to automate the process of metagenomic binning. These tools have enabled the recovery of novel draft genomes of microorganisms allowing us to study their behaviors and functions within microbial communities. This review classifies and analyzes different approaches of metagenomic binning and different refinement, visualization, and evaluation techniques used by these methods. Furthermore, the review highlights the current challenges and areas of improvement present within the field of research.
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- Type
- review
- Language
- en
- Landing Page
- https://doi.org/10.1093/bib/bbae372
- https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdf
- OA Status
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- Cited By
- 10
- References
- 151
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4401200561
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- OpenAlex ID
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https://openalex.org/W4401200561Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/bib/bbae372Digital Object Identifier
- Title
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Solving genomic puzzles: computational methods for metagenomic binningWork title
- Type
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reviewOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-07-25Full publication date if available
- Authors
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Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. EdwardsList of authors in order
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https://doi.org/10.1093/bib/bbae372Publisher landing page
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https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdfDirect OA link when available
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Metagenomics, Computer science, Field (mathematics), Computational biology, Genome, Visualization, Data science, Biology, Ecology, Data mining, Gene, Genetics, Mathematics, Pure mathematicsTop concepts (fields/topics) attached by OpenAlex
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10Total citation count in OpenAlex
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2025: 9, 2024: 1Per-year citation counts (last 5 years)
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151Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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