Standardization of assay representation in the Ontology for Biomedical Investigations Article Swipe
Randi Vita
,
Jie Zheng
,
Rebecca Jackson
,
Damion Dooley
,
James A. Overton
,
Mark A. Miller
,
Daniel C. Berrios
,
Richard H. Scheuermann
,
Yongqun He
,
Hande Küçük McGinty
,
Mathias Brochhausen
,
Aisyah Yu Lin
,
Sagar B Jain
,
Marcus C. Chibucos
,
J. Judkins
,
Michelle Giglio
,
Irene Y Feng
,
Gully Burns
,
Matthew Brush
,
Bjoern Peters
,
Christian J. Stoeckert
·
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1093/database/baab040
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1093/database/baab040
The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and standardize these terms. As a result, inconsistencies in W3C Web Ontology Language (OWL) expressions were identified and corrected, and additionally, standardized design patterns and a formalized template to maintain them were developed. We describe here this informative and productive process to describe the specific benefits and obstacles for OBI and the universal lessons for similar projects.
Related Topics
Concepts
Standardization
Ontology
Computer science
Process (computing)
Open Biomedical Ontologies
Software engineering
Representation (politics)
Hierarchy
Process ontology
Information retrieval
Ontology Inference Layer
OWL-S
Term (time)
World Wide Web
Semantic Web
Suggested Upper Merged Ontology
Programming language
Semantic Web Stack
Philosophy
Politics
Epistemology
Economics
Quantum mechanics
Physics
Operating system
Law
Political science
Market economy
Metadata
- Type
- review
- Language
- en
- Landing Page
- https://doi.org/10.1093/database/baab040
- https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab040/38888599/baab040.pdf
- OA Status
- gold
- Cited By
- 6
- References
- 7
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3181498676
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W3181498676Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/database/baab040Digital Object Identifier
- Title
-
Standardization of assay representation in the Ontology for Biomedical InvestigationsWork title
- Type
-
reviewOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2021Year of publication
- Publication date
-
2021-01-01Full publication date if available
- Authors
-
Randi Vita, Jie Zheng, Rebecca Jackson, Damion Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B Jain, Marcus C. Chibucos, J. Judkins, Michelle Giglio, Irene Y Feng, Gully Burns, Matthew Brush, Bjoern Peters, Christian J. StoeckertList of authors in order
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https://doi.org/10.1093/database/baab040Publisher landing page
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https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab040/38888599/baab040.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
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https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab040/38888599/baab040.pdfDirect OA link when available
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Standardization, Ontology, Computer science, Process (computing), Open Biomedical Ontologies, Software engineering, Representation (politics), Hierarchy, Process ontology, Information retrieval, Ontology Inference Layer, OWL-S, Term (time), World Wide Web, Semantic Web, Suggested Upper Merged Ontology, Programming language, Semantic Web Stack, Philosophy, Politics, Epistemology, Economics, Quantum mechanics, Physics, Operating system, Law, Political science, Market economyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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6Total citation count in OpenAlex
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2025: 1, 2023: 3, 2022: 2Per-year citation counts (last 5 years)
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7Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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