StarmapVis: An interactive and narrative visualisation tool for single-cell and spatial data Article Swipe
Shichao Ma
,
Xiunan Fang
,
Yao Yu
,
Jianfu Li
,
Daniel Morgan
,
Yongyan Xia
,
Crystal S.M. Kwok
,
Michelle C. K. Lo
,
Dickson M. D. Siu
,
Kevin K. Tsia
,
Andrian Yang
,
Joshua W. K. Ho
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1016/j.csbj.2023.02.023
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1016/j.csbj.2023.02.023
Current single-cell visualisation techniques project high dimensional data into 'map' views to identify high-level structures such as cell clusters and trajectories. New tools are needed to allow the transversal through the high dimensionality of single-cell data to explore the single-cell local neighbourhood. StarmapVis is a convenient web application displaying an interactive downstream analysis of single-cell expression or spatial transcriptomic data. The concise user interface is powered by modern web browsers to explore the variety of viewing angles unavailable to 2D media. Interactive scatter plots display clustering information, while the trajectory and cross-comparison among different coordinates are displayed in connectivity networks. Automated animation of camera view is a unique feature of our tool. StarmapVis also offers a useful animated transition between two-dimensional spatial omic data to three-dimensional single cell coordinates. The usability of StarmapVis is demonstrated by four data sets, showcasing its practical usability. StarmapVis is available at: https://holab-hku.github.io/starmapVis.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1016/j.csbj.2023.02.023
- http://www.csbj.org/article/S2001037023000697/pdf
- OA Status
- gold
- Cited By
- 3
- References
- 23
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4320717207
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4320717207Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1016/j.csbj.2023.02.023Digital Object Identifier
- Title
-
StarmapVis: An interactive and narrative visualisation tool for single-cell and spatial dataWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-01-01Full publication date if available
- Authors
-
Shichao Ma, Xiunan Fang, Yao Yu, Jianfu Li, Daniel Morgan, Yongyan Xia, Crystal S.M. Kwok, Michelle C. K. Lo, Dickson M. D. Siu, Kevin K. Tsia, Andrian Yang, Joshua W. K. HoList of authors in order
- Landing page
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https://doi.org/10.1016/j.csbj.2023.02.023Publisher landing page
- PDF URL
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https://www.csbj.org/article/S2001037023000697/pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.csbj.org/article/S2001037023000697/pdfDirect OA link when available
- Concepts
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Visualization, Narrative, Computer science, Data visualization, Interactive visualization, Computer graphics (images), Data science, Data mining, Art, LiteratureTop concepts (fields/topics) attached by OpenAlex
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3Total citation count in OpenAlex
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2025: 2, 2023: 1Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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