Structural Variants Selected during Yak Domestication Inferred from Long-Read Whole-Genome Sequencing Article Swipe
Shangzhe Zhang
,
Wenyu Liu
,
Xinfeng Liu
,
Xin Du
,
Ke Zhang
,
Yang Zhang
,
Yongwu Song
,
Yunnan Zi
,
Qiang Qiu
,
Johannes A. Lenstra
,
Jianquan Liu
·
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msab134
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msab134
Structural variants (SVs) represent an important genetic resource for both natural and artificial selection. Here we present a chromosome-scale reference genome for domestic yak (Bos grunniens) that has longer contigs and scaffolds (N50 44.72 and 114.39 Mb, respectively) than reported for any other ruminant genome. We further obtained long-read resequencing data for 6 wild and 23 domestic yaks and constructed a genetic SV map of 372,220 SVs that covers the geographic range of the yaks. The majority of the SVs contains repetitive sequences and several are in or near genes. By comparing SVs in domestic and wild yaks, we identified genes that are predominantly related to the nervous system, behavior, immunity, and reproduction and may have been targeted by artificial selection during yak domestication. These findings provide new insights in the domestication of animals living at high altitude and highlight the importance of SVs in animal domestication.
Related Topics
Concepts
Domestication
Biology
Contig
Genome
YAK
Evolutionary biology
Genetics
Gene
Whole genome sequencing
Animal science
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/molbev/msab134
- https://academic.oup.com/mbe/article-pdf/38/9/3676/39883058/msab134.pdf
- OA Status
- gold
- Cited By
- 49
- References
- 43
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3157808739
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3157808739Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/molbev/msab134Digital Object Identifier
- Title
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Structural Variants Selected during Yak Domestication Inferred from Long-Read Whole-Genome SequencingWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2021Year of publication
- Publication date
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2021-04-30Full publication date if available
- Authors
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Shangzhe Zhang, Wenyu Liu, Xinfeng Liu, Xin Du, Ke Zhang, Yang Zhang, Yongwu Song, Yunnan Zi, Qiang Qiu, Johannes A. Lenstra, Jianquan LiuList of authors in order
- Landing page
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https://doi.org/10.1093/molbev/msab134Publisher landing page
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https://academic.oup.com/mbe/article-pdf/38/9/3676/39883058/msab134.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://academic.oup.com/mbe/article-pdf/38/9/3676/39883058/msab134.pdfDirect OA link when available
- Concepts
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Domestication, Biology, Contig, Genome, YAK, Evolutionary biology, Genetics, Gene, Whole genome sequencing, Animal scienceTop concepts (fields/topics) attached by OpenAlex
- Cited by
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49Total citation count in OpenAlex
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2025: 5, 2024: 25, 2023: 11, 2022: 8Per-year citation counts (last 5 years)
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43Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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