Structure of the 30S ribosomal decoding complex at ambient temperature Article Swipe
E. Han Dao
,
Frédéric Poitevin
,
Raymond G. Sierra
,
Cornelius Gati
,
Yashas Rao
,
Halil I. Ciftci
,
Fulya Akşit
,
Alex McGurk
,
Trevor Obrinski
,
Paul Mgbam
,
Brandon Hayes
,
Casper de Lichtenberg
,
Fátima Pardo‐Ávila
,
Nicholas C. Corsepius
,
Lindsey Zhang
,
Matt Seaberg
,
Mark S. Hunter
,
Mengling Liang
,
Jason E. Koglin
,
Soichi Wakatsuki
,
Hasan DeMi̇rci̇
·
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1101/262972
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1101/262972
The ribosome translates nucleotide sequences of messenger RNA to proteins through selection of cognate transfer RNA according to the genetic code. To date, structural studies of ribosomal decoding complexes yielding high-resolution data have predominantly relied on experiments performed at cryogenic temperatures. New lightsources like the X-ray free electron laser (XFEL) have enabled data collection from macromolecular crystals at ambient temperature. Here, we report an X-ray crystal structure of the Thermus thermophilus 30S ribosomal subunit decoding complex to 3.45 Å resolution using data obtained at ambient temperature at the Linac Coherent Light Source (LCLS). We find that this ambient-temperature structure is largely consistent with existing cryogenic-temperature crystal structures, with key residues of the decoding complex exhibiting similar conformations, including adenosine residues 1492 and 1493. Minor variations were observed, namely an alternate conformation of cytosine 1397 near the mRNA channel and the A-site. Our serial crystallography experiment illustrates the amenability of ribosomal microcrystals to routine structural studies at ambient temperature, thus overcoming a long-standing experimental limitation.
Related Topics
Concepts
Thermus thermophilus
30S
Ribosome
Genetic code
Transfer RNA
Ribosomal RNA
Crystallography
Biophysics
RNA
Physics
Biology
Chemistry
DNA
Genetics
Escherichia coli
Gene
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/262972
- https://www.biorxiv.org/content/biorxiv/early/2018/03/09/262972.full.pdf
- OA Status
- green
- Cited By
- 1
- References
- 55
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2790384152
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2790384152Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/262972Digital Object Identifier
- Title
-
Structure of the 30S ribosomal decoding complex at ambient temperatureWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2018Year of publication
- Publication date
-
2018-02-10Full publication date if available
- Authors
-
E. Han Dao, Frédéric Poitevin, Raymond G. Sierra, Cornelius Gati, Yashas Rao, Halil I. Ciftci, Fulya Akşit, Alex McGurk, Trevor Obrinski, Paul Mgbam, Brandon Hayes, Casper de Lichtenberg, Fátima Pardo‐Ávila, Nicholas C. Corsepius, Lindsey Zhang, Matt Seaberg, Mark S. Hunter, Mengling Liang, Jason E. Koglin, Soichi Wakatsuki, Hasan DeMi̇rci̇List of authors in order
- Landing page
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https://doi.org/10.1101/262972Publisher landing page
- PDF URL
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https://www.biorxiv.org/content/biorxiv/early/2018/03/09/262972.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2018/03/09/262972.full.pdfDirect OA link when available
- Concepts
-
Thermus thermophilus, 30S, Ribosome, Genetic code, Transfer RNA, Ribosomal RNA, Crystallography, Biophysics, RNA, Physics, Biology, Chemistry, DNA, Genetics, Escherichia coli, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
1Total citation count in OpenAlex
- Citations by year (recent)
-
2018: 1Per-year citation counts (last 5 years)
- References (count)
-
55Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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