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Thomas G. Davies , Imran A. Rahman , Stephan Lautenschlager , John A. Cunningham , Robert J. Asher , Paul M. Barrett , Karl T. Bates , Stefan Bengtson , Roger Benson , Douglas Boyer , José Braga , Jen A. Bright , Leon P. A. M. Claessens , Philip G. Cox , Xiping Dong , Alistair R. Evans , Peter Falkingham , Matt Friedman , Russell J. Garwood , Anjali Goswami , John R. Hutchinson , Nathan Jeffery , Zerina Johanson , R Lebrun , Carlos Martínez‐Pérez , Jesús Marugán‐Lobón , Paul O’Higgins , Brian Metscher , Maëva J. Orliac , Timothy B. Rowe , Martin Rücklin , Marcelo R. Sánchez‐Villagra , Neil H. Shubin , Selena Y. Smith , J. Matthias Starck , Chris Stringer , Adam P. Summers , Mark D. Sutton , Stig A. Walsh , Vera Weisbecker , Stephen Wroe , Zongjun Yin , Emily J. Rayfield , Philip C. J. Donoghue ·

YOU? · · 2017 · Open Access · · DOI: https://doi.org/10.6084/m9.figshare.c.3740174.v1

Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.

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Morphology (Biology)

Computer Science

Paleontology

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Morphology (biology) Computer science Geology Paleontology

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Type: article
Language: en
Landing Page: https://doi.org/10.6084/m9.figshare.c.3740174.v1
OA Status: gold
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DOI: https://doi.org/10.6084/m9.figshare.c.3740174.v1

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Title: Supplementary material from "Open data and digital morphology"

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Language: en

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Publication year: 2017

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Publication date: 2017-01-01

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Authors: Thomas G. Davies, Imran A. Rahman, Stephan Lautenschlager, John A. Cunningham, Robert J. Asher, Paul M. Barrett, Karl T. Bates, Stefan Bengtson, Roger Benson, Douglas Boyer, José Braga, Jen A. Bright, Leon P. A. M. Claessens, Philip G. Cox, Xiping Dong, Alistair R. Evans, Peter Falkingham, Matt Friedman, Russell J. Garwood, Anjali Goswami, John R. Hutchinson, Nathan Jeffery, Zerina Johanson, R Lebrun, Carlos Martínez‐Pérez, Jesús Marugán‐Lobón, Paul O’Higgins, Brian Metscher, Maëva J. Orliac, Timothy B. Rowe, Martin Rücklin, Marcelo R. Sánchez‐Villagra, Neil H. Shubin, Selena Y. Smith, J. Matthias Starck, Chris Stringer, Adam P. Summers, Mark D. Sutton, Stig A. Walsh, Vera Weisbecker, Stephen Wroe, Zongjun Yin, Emily J. Rayfield, Philip C. J. Donoghue

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Landing page: https://doi.org/10.6084/m9.figshare.c.3740174.v1

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Concepts: Morphology (biology), Computer science, Geology, Paleontology

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abstract_inverted_index.The	54
abstract_inverted_index.and	11, 17, 27, 72, 74, 89, 102, 122, 131, 139
abstract_inverted_index.are	61, 106
abstract_inverted_index.for	9, 57, 119, 126
abstract_inverted_index.has	21, 49
abstract_inverted_index.not	50, 62
abstract_inverted_index.on,	109
abstract_inverted_index.set	116
abstract_inverted_index.the	1, 5, 23, 31, 35, 45, 75, 87, 133
abstract_inverted_index.two	3
abstract_inverted_index.Over	0
abstract_inverted_index.been	51
abstract_inverted_index.best	124
abstract_inverted_index.data	48, 92, 129, 136
abstract_inverted_index.even	18
abstract_inverted_index.four	19
abstract_inverted_index.made	96
abstract_inverted_index.many	58
abstract_inverted_index.past	2
abstract_inverted_index.some	104
abstract_inverted_index.such	39
abstract_inverted_index.that	34, 93, 100
abstract_inverted_index.type	90
abstract_inverted_index.use,	101
abstract_inverted_index.Here,	112
abstract_inverted_index.There	79
abstract_inverted_index.cases	105
abstract_inverted_index.data.	78
abstract_inverted_index.fully	52
abstract_inverted_index.reuse	76
abstract_inverted_index.study	24
abstract_inverted_index.three	16
abstract_inverted_index.would	41
abstract_inverted_index.access	43
abstract_inverted_index.amount	88
abstract_inverted_index.around	135
abstract_inverted_index.fossil	28
abstract_inverted_index.freely	65
abstract_inverted_index.issues	134
abstract_inverted_index.living	26
abstract_inverted_index.policy	85
abstract_inverted_index.review	132
abstract_inverted_index.should	94
abstract_inverted_index.wholly	107
abstract_inverted_index.barrier	69
abstract_inverted_index.current	82
abstract_inverted_index.digital	47, 110, 128
abstract_inverted_index.initial	32
abstract_inverted_index.methods	8, 40
abstract_inverted_index.minimum	120
abstract_inverted_index.promise	33
abstract_inverted_index.propose	114
abstract_inverted_index.readily	63
abstract_inverted_index.reliant	108
abstract_inverted_index.studies	60, 99
abstract_inverted_index.However,	30
abstract_inverted_index.datasets	56
abstract_inverted_index.decades,	4
abstract_inverted_index.practice	125
abstract_inverted_index.storage,	137
abstract_inverted_index.achieved.	53
abstract_inverted_index.agreement	83
abstract_inverted_index.alongside	98
abstract_inverted_index.analysing	12
abstract_inverted_index.available	97
abstract_inverted_index.published	59
abstract_inverted_index.specimens	13
abstract_inverted_index.standards	121
abstract_inverted_index.additional	123
abstract_inverted_index.available,	66
abstract_inverted_index.digitally,	14
abstract_inverted_index.facilitate	42
abstract_inverted_index.management	138
abstract_inverted_index.organisms.	29
abstract_inverted_index.underlying	46, 55
abstract_inverted_index.widespread	36
abstract_inverted_index.application	37
abstract_inverted_index.development	6
abstract_inverted_index.dimensions,	20
abstract_inverted_index.introducing	67
abstract_inverted_index.morphology.	111
abstract_inverted_index.transformed	22
abstract_inverted_index.visualizing	10
abstract_inverted_index.publication,	130
abstract_inverted_index.verification	71
abstract_inverted_index.accessibility.	140
abstract_inverted_index.recommendations	118
abstract_inverted_index.reproducibility,	73
abstract_inverted_index.three-dimensional	127
cited_by_percentile_year
countries_distinct_count	0
institutions_distinct_count	44
citation_normalized_percentile