Supplementary Tables from Analysis of donor pancreata defines the transcriptomic signature and microenvironment of early neoplastic lesions. Article Swipe

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Eileen S. Carpenter , Ahmed M. Elhossiny , Padma Kadiyala , Jay Li , Jake McGue , Brian D. Griffith , Yaqing Zhang , Jacob Edwards , Sarah Nelson , Fatima Lima , Katelyn L. Donahue , Wenting Du , Allison C. Bischoff , Danyah Alomari , Hannah R. Watkoske , Michael Mattea , Stephanie The , Carlos E. Espinoza , Meredith Barrett , Christopher J. Sonnenday , Nicholas Olden , Chin‐Tung Chen , Nicole Peterson , Valerie Gunchick , Vaibhav Sahai , Arvind Rao , Filip Bednar , Jiaqi Shi , Timothy L. Frankel , Marina Pasca di Magliano ·

YOU? · · 2024 · Open Access · · DOI: https://doi.org/10.1158/2159-8290.27025526.v1

Supplemental Table 1: Demographics and clinical data for donor Gife of Life Samples Supplemental Table 2: Putative Ligand-Receptor pairs comparing all cell types from single cell sequencing of tumor samples compared to healthy samples. Supplemental Table 3: Differential gene expression using linear mixed model analysis of cell types from spatial transcriptomic ROIs. Supplemental Table 4: Kras mutational profiling on select donor samples Supplemental Table 5: Antibodies used for multiplex immunofluoresence. Supplemental Table 6: Antibodies and RNAScope probe used for co-IF/ISH.

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Signature (topology) Transcriptome Computational biology Biology Cancer research Genetics Gene Mathematics Gene expression Geometry

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Type: supplementary-materials
Language: en
Landing Page: http://doi.org/10.1158/2159-8290.27025526.v1
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Title: Supplementary Tables from Analysis of donor pancreata defines the transcriptomic signature and microenvironment of early neoplastic lesions.

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Publication year: 2024

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Authors: Eileen S. Carpenter, Ahmed M. Elhossiny, Padma Kadiyala, Jay Li, Jake McGue, Brian D. Griffith, Yaqing Zhang, Jacob Edwards, Sarah Nelson, Fatima Lima, Katelyn L. Donahue, Wenting Du, Allison C. Bischoff, Danyah Alomari, Hannah R. Watkoske, Michael Mattea, Stephanie The, Carlos E. Espinoza, Meredith Barrett, Christopher J. Sonnenday, Nicholas Olden, Chin‐Tung Chen, Nicole Peterson, Valerie Gunchick, Vaibhav Sahai, Arvind Rao, Filip Bednar, Jiaqi Shi, Timothy L. Frankel, Marina Pasca di Magliano

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Concepts: Signature (topology), Transcriptome, Computational biology, Biology, Cancer research, Genetics, Gene, Mathematics, Gene expression, Geometry

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abstract_inverted_index.compared	30
abstract_inverted_index.samples.	33
abstract_inverted_index.comparing	19
abstract_inverted_index.multiplex	68
abstract_inverted_index.profiling	57
abstract_inverted_index.Antibodies	65, 73
abstract_inverted_index.expression	39
abstract_inverted_index.mutational	56
abstract_inverted_index.sequencing	26
abstract_inverted_index.Demographics	3
abstract_inverted_index.Differential	37
abstract_inverted_index.Supplemental	13, 34, 52, 62, 70
abstract_inverted_index.transcriptomic	50
abstract_inverted_index.Ligand-Receptor	17
abstract_inverted_index.immunofluoresence.	69
abstract_inverted_index.co-IF/ISH.</p>	79
abstract_inverted_index.<p>Supplemental	0
cited_by_percentile_year
countries_distinct_count	0
institutions_distinct_count	30
citation_normalized_percentile.value	0.31678709
citation_normalized_percentile.is_in_top_1_percent	False
citation_normalized_percentile.is_in_top_10_percent	False