Temperature, pH, and oxygen availability contributed to the functional differentiation of ancient Nitrososphaeria Article Swipe
Zhen‐Hao Luo
,
Qi Li
,
Yuan-Guo Xie
,
LV Ai-ping
,
Yan-Ling Qi
,
Meng‐Meng Li
,
Yan-Ni Qu
,
Ze‐Tao Liu
,
Yu-Xian Li
,
Yang-Zhi Rao
,
Jian‐Yu Jiao
,
Lan Liu
,
Manik Prabhu Narsing Rao
,
Brian P. Hedlund
,
Paul N. Evans
,
Yuan Fang
,
Wensheng Shu
,
Li‐Nan Huang
,
Wen‐Jun Li
,
Zheng‐Shuang Hua
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/ismejo/wrad031
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/ismejo/wrad031
Ammonia-oxidizing Nitrososphaeria are among the most abundant archaea on Earth and have profound impacts on the biogeochemical cycles of carbon and nitrogen. In contrast to these well-studied ammonia-oxidizing archaea (AOA), deep-branching non-AOA within this class remain poorly characterized because of a low number of genome representatives. Here, we reconstructed 128 Nitrososphaeria metagenome-assembled genomes from acid mine drainage and hot spring sediment metagenomes. Comparative genomics revealed that extant non-AOA are functionally diverse, with capacity for carbon fixation, carbon monoxide oxidation, methanogenesis, and respiratory pathways including oxygen, nitrate, sulfur, or sulfate, as potential terminal electron acceptors. Despite their diverse anaerobic pathways, evolutionary history inference suggested that the common ancestor of Nitrososphaeria was likely an aerobic thermophile. We further surmise that the functional differentiation of Nitrososphaeria was primarily shaped by oxygen, pH, and temperature, with the acquisition of pathways for carbon, nitrogen, and sulfur metabolism. Our study provides a more holistic and less biased understanding of the diversity, ecology, and deep evolution of the globally abundant Nitrososphaeria.
Related Topics
Concepts
Archaea
Biology
Geomicrobiology
Microbial ecology
Metagenomics
Thaumarchaeota
Ecology
Sulfur
Nitrogen cycle
Biogeochemical cycle
Microbial metabolism
Extreme environment
Carbon fixation
Environmental chemistry
Environmental biotechnology
Bacteria
Nitrogen
Biochemistry
Carbon dioxide
Gene
Genetics
Chemistry
Organic chemistry
Quantum mechanics
Physics
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/ismejo/wrad031
- https://academic.oup.com/ismej/advance-article-pdf/doi/10.1093/ismejo/wrad031/55147078/wrad031.pdf
- OA Status
- gold
- Cited By
- 13
- References
- 84
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4390704489
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4390704489Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/ismejo/wrad031Digital Object Identifier
- Title
-
Temperature, pH, and oxygen availability contributed to the functional differentiation of ancient NitrososphaeriaWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-01-01Full publication date if available
- Authors
-
Zhen‐Hao Luo, Qi Li, Yuan-Guo Xie, LV Ai-ping, Yan-Ling Qi, Meng‐Meng Li, Yan-Ni Qu, Ze‐Tao Liu, Yu-Xian Li, Yang-Zhi Rao, Jian‐Yu Jiao, Lan Liu, Manik Prabhu Narsing Rao, Brian P. Hedlund, Paul N. Evans, Yuan Fang, Wensheng Shu, Li‐Nan Huang, Wen‐Jun Li, Zheng‐Shuang HuaList of authors in order
- Landing page
-
https://doi.org/10.1093/ismejo/wrad031Publisher landing page
- PDF URL
-
https://academic.oup.com/ismej/advance-article-pdf/doi/10.1093/ismejo/wrad031/55147078/wrad031.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://academic.oup.com/ismej/advance-article-pdf/doi/10.1093/ismejo/wrad031/55147078/wrad031.pdfDirect OA link when available
- Concepts
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Archaea, Biology, Geomicrobiology, Microbial ecology, Metagenomics, Thaumarchaeota, Ecology, Sulfur, Nitrogen cycle, Biogeochemical cycle, Microbial metabolism, Extreme environment, Carbon fixation, Environmental chemistry, Environmental biotechnology, Bacteria, Nitrogen, Biochemistry, Carbon dioxide, Gene, Genetics, Chemistry, Organic chemistry, Quantum mechanics, PhysicsTop concepts (fields/topics) attached by OpenAlex
- Cited by
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13Total citation count in OpenAlex
- Citations by year (recent)
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2025: 8, 2024: 5Per-year citation counts (last 5 years)
- References (count)
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84Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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