The Aspartate-Less Receiver (ALR) Domains: Distribution, Structure and Function Article Swipe
Andrew Maule
,
David P. Wright
,
Joshua Weiner
,
Lanlan Han
,
Francis C. Peterson
,
Brian F. Volkman
,
N.R. Silvaggi
,
Andrew T. Ulijasz
·
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1371/journal.ppat.1004795
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1371/journal.ppat.1004795
Two-component signaling systems are ubiquitous in bacteria, Archaea and plants and play important roles in sensing and responding to environmental stimuli. To propagate a signaling response the typical system employs a sensory histidine kinase that phosphorylates a Receiver (REC) domain on a conserved aspartate (Asp) residue. Although it is known that some REC domains are missing this Asp residue, it remains unclear as to how many of these divergent REC domains exist, what their functional roles are and how they are regulated in the absence of the conserved Asp. Here we have compiled all deposited REC domains missing their phosphorylatable Asp residue, renamed here as the Aspartate-Less Receiver (ALR) domains. Our data show that ALRs are surprisingly common and are enriched for when attached to more rare effector outputs. Analysis of our informatics and the available ALR atomic structures, combined with structural, biochemical and genetic data of the ALR archetype RitR from Streptococcus pneumoniae presented here suggest that ALRs have reorganized their active pockets to instead take on a constitutive regulatory role or accommodate input signals other than Asp phosphorylation, while largely retaining the canonical post-phosphorylation mechanisms and dimeric interface. This work defines ALRs as an atypical REC subclass and provides insights into shared mechanisms of activation between ALR and REC domains.
Related Topics
Concepts
Phosphorylation
Biology
Effector
Cell biology
Residue (chemistry)
Computational biology
Function (biology)
Two-component regulatory system
Signal transduction
Biochemistry
Mutant
Gene
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1371/journal.ppat.1004795
- https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1004795&type=printable
- OA Status
- gold
- Cited By
- 30
- References
- 93
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2072399745
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2072399745Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1371/journal.ppat.1004795Digital Object Identifier
- Title
-
The Aspartate-Less Receiver (ALR) Domains: Distribution, Structure and FunctionWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2015Year of publication
- Publication date
-
2015-04-13Full publication date if available
- Authors
-
Andrew Maule, David P. Wright, Joshua Weiner, Lanlan Han, Francis C. Peterson, Brian F. Volkman, N.R. Silvaggi, Andrew T. UlijaszList of authors in order
- Landing page
-
https://doi.org/10.1371/journal.ppat.1004795Publisher landing page
- PDF URL
-
https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1004795&type=printableDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1004795&type=printableDirect OA link when available
- Concepts
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Phosphorylation, Biology, Effector, Cell biology, Residue (chemistry), Computational biology, Function (biology), Two-component regulatory system, Signal transduction, Biochemistry, Mutant, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
30Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 3, 2023: 2, 2022: 1, 2021: 4, 2020: 3Per-year citation counts (last 5 years)
- References (count)
-
93Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.stimuli. | 20 |
| abstract_inverted_index.subclass | 198 |
| abstract_inverted_index.archetype | 149 |
| abstract_inverted_index.aspartate | 43 |
| abstract_inverted_index.available | 135 |
| abstract_inverted_index.bacteria, | 6 |
| abstract_inverted_index.canonical | 184 |
| abstract_inverted_index.conserved | 42, 87 |
| abstract_inverted_index.deposited | 94 |
| abstract_inverted_index.divergent | 68 |
| abstract_inverted_index.histidine | 32 |
| abstract_inverted_index.important | 12 |
| abstract_inverted_index.presented | 154 |
| abstract_inverted_index.propagate | 22 |
| abstract_inverted_index.regulated | 81 |
| abstract_inverted_index.retaining | 182 |
| abstract_inverted_index.signaling | 1, 24 |
| abstract_inverted_index.activation | 206 |
| abstract_inverted_index.functional | 74 |
| abstract_inverted_index.interface. | 189 |
| abstract_inverted_index.mechanisms | 186, 204 |
| abstract_inverted_index.pneumoniae | 153 |
| abstract_inverted_index.regulatory | 170 |
| abstract_inverted_index.responding | 17 |
| abstract_inverted_index.ubiquitous | 4 |
| abstract_inverted_index.accommodate | 173 |
| abstract_inverted_index.biochemical | 142 |
| abstract_inverted_index.informatics | 132 |
| abstract_inverted_index.reorganized | 160 |
| abstract_inverted_index.structural, | 141 |
| abstract_inverted_index.structures, | 138 |
| abstract_inverted_index.constitutive | 169 |
| abstract_inverted_index.surprisingly | 116 |
| abstract_inverted_index.Streptococcus | 152 |
| abstract_inverted_index.Two-component | 0 |
| abstract_inverted_index.environmental | 19 |
| abstract_inverted_index.Aspartate-Less | 106 |
| abstract_inverted_index.phosphorylates | 35 |
| abstract_inverted_index.phosphorylatable | 99 |
| abstract_inverted_index.phosphorylation, | 179 |
| abstract_inverted_index.post-phosphorylation | 185 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 89 |
| corresponding_author_ids | https://openalex.org/A5007750328, https://openalex.org/A5088703972, https://openalex.org/A5022620914, https://openalex.org/A5020847482, https://openalex.org/A5056230355, https://openalex.org/A5066145908, https://openalex.org/A5056198189, https://openalex.org/A5101036192 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 8 |
| corresponding_institution_ids | https://openalex.org/I204308271, https://openalex.org/I43579087, https://openalex.org/I47508984 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.6399999856948853 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.92939323 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |