The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life Article Swipe
Mark Blaxter
,
Harris A. Lewin
,
Federica Di-Palma
,
Richard Challis
,
Manuela da Silva
,
Richard Durbin
,
Giulio Formenti
,
Nico M. Franz
,
Roderic Guigó
,
Peter W. Harrison
,
Michael Hiller
,
Katharina J. Hoff
,
Kerstin Howe
,
Erich D. Jarvis
,
Mara Lawniczak
,
Kerstin Lindblad‐Toh
,
Debra Mathews
,
Fergal J. Martin
,
Camila J. Mazzoni
,
Ann M. Mc Cartney
,
Nicola Mulder
,
Sadye Paez
,
Kim D. Pruitt
,
Verena Ras
,
Oliver A. Ryder
,
Lesley Shirley
,
Françoise Thibaud‐Nissen
,
Tandy Warnow
,
Robert M. Waterhouse
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.3389/fsci.2025.1514835
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.3389/fsci.2025.1514835
The Earth BioGenome Project (EBP) aims to “sequence life for the future of life” by generating high-quality reference genome sequences for all recognized eukaryotic species, thereby building a rich knowledge base to inform conservation, inspire bioindustry, ensure food security, advance medicine, and establish a deeper understanding of biodiversity. As the EBP works toward completing the original Phase I goal—a reference genome for each of the approximately 10,000 taxonomic families of eukaryotes—milestone publications have demonstrated the transformative potential of the project. The EBP has promoted global collaboration and established core methods and standards. By the end of 2024, EBP-affiliated projects had publicly released 2,000 high-quality genome assemblies, representing more than 500 eukaryotic families. In this article, we present a revised set of goals for Phases I and II of the EBP. For Phase II, we propose generating reference genomes for 150,000 species over 4 years, including representative genomes for at least 50% of all accepted genera and for additional species of biological and economic importance. To deliver Phase II, EBP-affiliated projects will have to release over 3,000 new genomes per month. We review the magnitude of the tasks in sourcing, sequencing, assembling, annotating, and analyzing genomes at this scale, and explore the scientific, technical, social, legal, ethical, and funding challenges associated with them. Success in Phase II will set the stage for sequencing the remaining ~1.5 million named species of Eukaryota and establishing the knowledge platforms necessary for understanding, preserving, and utilizing Earth’s biodiversity in an era of rapid environmental change.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3389/fsci.2025.1514835
- https://www.frontiersin.org/journals/science/articles/10.3389/fsci.2025.1514835/pdf
- OA Status
- diamond
- Cited By
- 5
- References
- 105
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4413992903
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4413992903Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3389/fsci.2025.1514835Digital Object Identifier
- Title
-
The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of lifeWork title
- Type
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articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2025Year of publication
- Publication date
-
2025-09-04Full publication date if available
- Authors
-
Mark Blaxter, Harris A. Lewin, Federica Di-Palma, Richard Challis, Manuela da Silva, Richard Durbin, Giulio Formenti, Nico M. Franz, Roderic Guigó, Peter W. Harrison, Michael Hiller, Katharina J. Hoff, Kerstin Howe, Erich D. Jarvis, Mara Lawniczak, Kerstin Lindblad‐Toh, Debra Mathews, Fergal J. Martin, Camila J. Mazzoni, Ann M. Mc Cartney, Nicola Mulder, Sadye Paez, Kim D. Pruitt, Verena Ras, Oliver A. Ryder, Lesley Shirley, Françoise Thibaud‐Nissen, Tandy Warnow, Robert M. WaterhouseList of authors in order
- Landing page
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https://doi.org/10.3389/fsci.2025.1514835Publisher landing page
- PDF URL
-
https://www.frontiersin.org/journals/science/articles/10.3389/fsci.2025.1514835/pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
diamondOpen access status per OpenAlex
- OA URL
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https://www.frontiersin.org/journals/science/articles/10.3389/fsci.2025.1514835/pdfDirect OA link when available
- Concepts
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Earth (classical element), Astrobiology, Tree of life (biology), Tree (set theory), Phase (matter), Earth science, Geology, Biology, Physics, Astronomy, Mathematics, Phylogenetics, Biochemistry, Gene, Quantum mechanics, Mathematical analysisTop concepts (fields/topics) attached by OpenAlex
- Cited by
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5Total citation count in OpenAlex
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2025: 5Per-year citation counts (last 5 years)
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105Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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