The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity Article Swipe
Rowan Schley
,
Jaume Pellicer
,
Xue‐Jun Ge
,
Craig F. Barrett
,
Sidonie Bellot
,
Maïté S. Guignard
,
Petr Novák
,
Jan Suda
,
Donald P. Fraser
,
William J. Baker
,
Steven Dodsworth
,
Jir̆ı́ Macas
,
Andrew R. Leitch
,
Ilia J. Leitch
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1111/nph.18323
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1111/nph.18323
Summary Genome size varies 2400‐fold across plants, influencing their evolution through changes in cell size and cell division rates which impact plants' environmental stress tolerance. Repetitive element expansion explains much genome size diversity, and the processes structuring repeat ‘communities’ are analogous to those structuring ecological communities. However, which environmental stressors influence repeat community dynamics has not yet been examined from an ecological perspective. We measured genome size and leveraged climatic data for 91% of genera within the ecologically diverse palm family (Arecaceae). We then generated genomic repeat profiles for 141 palm species, and analysed repeats using phylogenetically informed linear models to explore relationships between repeat dynamics and environmental factors. We show that palm genome size and repeat ‘community’ composition are best explained by aridity. Specifically, Ty3‐gypsy and TIR elements were more abundant in palm species from wetter environments, which generally had larger genomes, suggesting amplification. By contrast, Ty1‐copia and LINE elements were more abundant in drier environments. Our results suggest that water stress inhibits repeat expansion through selection on upper genome size limits. However, elements that may associate with stress‐response genes (e.g. Ty1‐copia ) have amplified in arid‐adapted palm species. Overall, we provide novel evidence of climate influencing the assembly of repeat ‘communities’.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1111/nph.18323
- https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.18323
- OA Status
- hybrid
- Cited By
- 42
- References
- 77
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4283123496
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4283123496Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1111/nph.18323Digital Object Identifier
- Title
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The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridityWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-06-19Full publication date if available
- Authors
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Rowan Schley, Jaume Pellicer, Xue‐Jun Ge, Craig F. Barrett, Sidonie Bellot, Maïté S. Guignard, Petr Novák, Jan Suda, Donald P. Fraser, William J. Baker, Steven Dodsworth, Jir̆ı́ Macas, Andrew R. Leitch, Ilia J. LeitchList of authors in order
- Landing page
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https://doi.org/10.1111/nph.18323Publisher landing page
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https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.18323Direct link to full text PDF
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YesWhether a free full text is available
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hybridOpen access status per OpenAlex
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https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/nph.18323Direct OA link when available
- Concepts
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Genome size, Biology, Arecaceae, Genome, Ecology, Palm, Arid, Evolutionary biology, Retrotransposon, Genetics, Gene, Transposable element, Physics, Quantum mechanicsTop concepts (fields/topics) attached by OpenAlex
- Cited by
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42Total citation count in OpenAlex
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2025: 13, 2024: 18, 2023: 10, 2022: 1Per-year citation counts (last 5 years)
- References (count)
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77Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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