The Enigma of Progressively Partial Endoreplication: New Insights Provided by Flow Cytometry and Next-Generation Sequencing Article Swipe
Eva Hřibová
,
Kateřina Holušová
,
Pavel Trávníček
,
Beáta Petrovská
,
Jan Ponert
,
Hana Šimková
,
Barbora Kubátová
,
Jana Jersáková
,
Vladislav Čurn
,
Jan Suda
,
Jaroslav Doležel
,
Jan Vrána
·
YOU?
·
· 2016
· Open Access
·
· DOI: https://doi.org/10.1093/gbe/evw141
YOU?
·
· 2016
· Open Access
·
· DOI: https://doi.org/10.1093/gbe/evw141
In many plant species, somatic cell differentiation is accompanied by endoreduplication, a process during which cells undergo one or more rounds of DNA replication cycles in the absence of mitosis, resulting in nuclei with multiples of 2C DNA amounts (4C, 8C, 16C, etc.). In some orchids, a disproportionate increase in nuclear DNA contents has been observed, where successive endoreduplication cycles result in DNA amounts 2C + P, 2C + 3P, 2C + 7P, etc., where P is the DNA content of the replicated part of the 2C nuclear genome. This unique phenomenon was termed "progressively partial endoreplication" (PPE). We investigated processes behind the PPE in Ludisia discolor using flow cytometry (FCM) and Illumina sequencing. In particular, we wanted to determine whether chromatin elimination or incomplete genome duplication was involved, and to identify types of DNA sequences that were affected. Cell cycle analysis of root tip cell nuclei pulse-labeled with EdU revealed two cell cycles, one ending above the population of nuclei with 2C + P content, and the other with a typical "horseshoe" pattern of S-phase nuclei ranging from 2C to 4C DNA contents. The process leading to nuclei with 2C + P amounts therefore involves incomplete genome replication. Subsequent Illumina sequencing of flow-sorted 2C and 2C + P nuclei showed that all types of repetitive DNA sequences were affected during PPE; a complete elimination of any specific type of repetitive DNA was not observed. We hypothesize that PPE is part of a highly controlled transition mechanism from proliferation phase to differentiation phase of plant tissue development.
Related Topics
Concepts
Biology
Endoreduplication
Evolutionary biology
DNA sequencing
Flow cytometry
Computational biology
Genetics
Ploidy
DNA
Gene
Metadata
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- Language
- en
- Landing Page
- https://doi.org/10.1093/gbe/evw141
- https://academic.oup.com/gbe/article-pdf/8/6/1996/7929787/evw141.pdf
- OA Status
- gold
- Cited By
- 23
- References
- 55
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2465925328
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2465925328Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/gbe/evw141Digital Object Identifier
- Title
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The Enigma of Progressively Partial Endoreplication: New Insights Provided by Flow Cytometry and Next-Generation SequencingWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2016Year of publication
- Publication date
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2016-06-01Full publication date if available
- Authors
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Eva Hřibová, Kateřina Holušová, Pavel Trávníček, Beáta Petrovská, Jan Ponert, Hana Šimková, Barbora Kubátová, Jana Jersáková, Vladislav Čurn, Jan Suda, Jaroslav Doležel, Jan VránaList of authors in order
- Landing page
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https://doi.org/10.1093/gbe/evw141Publisher landing page
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https://academic.oup.com/gbe/article-pdf/8/6/1996/7929787/evw141.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
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https://academic.oup.com/gbe/article-pdf/8/6/1996/7929787/evw141.pdfDirect OA link when available
- Concepts
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Biology, Endoreduplication, Evolutionary biology, DNA sequencing, Flow cytometry, Computational biology, Genetics, Ploidy, DNA, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
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23Total citation count in OpenAlex
- Citations by year (recent)
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2025: 4, 2022: 2, 2021: 5, 2020: 4, 2019: 1Per-year citation counts (last 5 years)
- References (count)
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55Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.other | 168 |
| abstract_inverted_index.phase | 249, 252 |
| abstract_inverted_index.plant | 2, 254 |
| abstract_inverted_index.types | 132, 213 |
| abstract_inverted_index.using | 107 |
| abstract_inverted_index.where | 56, 74 |
| abstract_inverted_index.which | 14 |
| abstract_inverted_index.(PPE). | 97 |
| abstract_inverted_index.behind | 101 |
| abstract_inverted_index.cycles | 24, 59 |
| abstract_inverted_index.during | 13, 220 |
| abstract_inverted_index.ending | 155 |
| abstract_inverted_index.etc.). | 42 |
| abstract_inverted_index.genome | 125, 197 |
| abstract_inverted_index.highly | 243 |
| abstract_inverted_index.nuclei | 32, 146, 160, 176, 188, 209 |
| abstract_inverted_index.result | 60 |
| abstract_inverted_index.rounds | 20 |
| abstract_inverted_index.showed | 210 |
| abstract_inverted_index.termed | 93 |
| abstract_inverted_index.tissue | 255 |
| abstract_inverted_index.unique | 90 |
| abstract_inverted_index.wanted | 117 |
| abstract_inverted_index.Ludisia | 105 |
| abstract_inverted_index.S-phase | 175 |
| abstract_inverted_index.absence | 27 |
| abstract_inverted_index.amounts | 38, 63, 193 |
| abstract_inverted_index.content | 79 |
| abstract_inverted_index.cycles, | 153 |
| abstract_inverted_index.genome. | 88 |
| abstract_inverted_index.leading | 186 |
| abstract_inverted_index.nuclear | 50, 87 |
| abstract_inverted_index.partial | 95 |
| abstract_inverted_index.pattern | 173 |
| abstract_inverted_index.process | 12, 185 |
| abstract_inverted_index.ranging | 177 |
| abstract_inverted_index.somatic | 4 |
| abstract_inverted_index.typical | 171 |
| abstract_inverted_index.undergo | 16 |
| abstract_inverted_index.whether | 120 |
| abstract_inverted_index.Illumina | 112, 200 |
| abstract_inverted_index.affected | 219 |
| abstract_inverted_index.analysis | 141 |
| abstract_inverted_index.complete | 223 |
| abstract_inverted_index.content, | 165 |
| abstract_inverted_index.contents | 52 |
| abstract_inverted_index.discolor | 106 |
| abstract_inverted_index.identify | 131 |
| abstract_inverted_index.increase | 48 |
| abstract_inverted_index.involves | 195 |
| abstract_inverted_index.mitosis, | 29 |
| abstract_inverted_index.orchids, | 45 |
| abstract_inverted_index.revealed | 150 |
| abstract_inverted_index.species, | 3 |
| abstract_inverted_index.specific | 227 |
| abstract_inverted_index.affected. | 138 |
| abstract_inverted_index.chromatin | 121 |
| abstract_inverted_index.contents. | 183 |
| abstract_inverted_index.cytometry | 109 |
| abstract_inverted_index.determine | 119 |
| abstract_inverted_index.involved, | 128 |
| abstract_inverted_index.mechanism | 246 |
| abstract_inverted_index.multiples | 34 |
| abstract_inverted_index.observed, | 55 |
| abstract_inverted_index.observed. | 234 |
| abstract_inverted_index.processes | 100 |
| abstract_inverted_index.resulting | 30 |
| abstract_inverted_index.sequences | 135, 217 |
| abstract_inverted_index.therefore | 194 |
| abstract_inverted_index.Subsequent | 199 |
| abstract_inverted_index.controlled | 244 |
| abstract_inverted_index.incomplete | 124, 196 |
| abstract_inverted_index.phenomenon | 91 |
| abstract_inverted_index.population | 158 |
| abstract_inverted_index.repetitive | 215, 230 |
| abstract_inverted_index.replicated | 82 |
| abstract_inverted_index.sequencing | 201 |
| abstract_inverted_index.successive | 57 |
| abstract_inverted_index.transition | 245 |
| abstract_inverted_index."horseshoe" | 172 |
| abstract_inverted_index.accompanied | 8 |
| abstract_inverted_index.duplication | 126 |
| abstract_inverted_index.elimination | 122, 224 |
| abstract_inverted_index.flow-sorted | 203 |
| abstract_inverted_index.hypothesize | 236 |
| abstract_inverted_index.particular, | 115 |
| abstract_inverted_index.replication | 23 |
| abstract_inverted_index.sequencing. | 113 |
| abstract_inverted_index.development. | 256 |
| abstract_inverted_index.investigated | 99 |
| abstract_inverted_index.replication. | 198 |
| abstract_inverted_index.proliferation | 248 |
| abstract_inverted_index.pulse-labeled | 147 |
| abstract_inverted_index."progressively | 94 |
| abstract_inverted_index.differentiation | 6, 251 |
| abstract_inverted_index.disproportionate | 47 |
| abstract_inverted_index.endoreplication" | 96 |
| abstract_inverted_index.endoreduplication | 58 |
| abstract_inverted_index.endoreduplication, | 10 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 90 |
| corresponding_author_ids | https://openalex.org/A5071812121 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 12 |
| corresponding_institution_ids | https://openalex.org/I4210156025 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.6299999952316284 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.83252109 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |