The epigenomic landscape of bronchial epithelial cells reveals the establishment of trained immunity Article Swipe
Jeanne Bigot
,
Rachel Legendre
,
Juliette Hamroune
,
Sébastien Jacques
,
Mathieu Le Gars
,
Nicolas Millet
,
Loïc Guillot
,
Harriet Corvol
,
Christophe Hennequin
,
J. Guitard
,
Jean‐Yves Coppée
,
Viviane Balloy
,
Claudia Chica
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1038/s41435-025-00357-z
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1038/s41435-025-00357-z
Innate immune memory, also called trained immunity, refers to the ability of innate immune cells to gain memory characteristics after transient stimulation, resulting in a nonspecific modified inflammatory response upon secondary remote challenge. Bronchial epithelial cells (BECs) participate in innate immune defence and are the first cells of the lower respiratory tract to encounter inhaled pathogens. We recently showed that BECs are capable of innate immune memory after preexposure to Pseudomonas aeruginosa flagellin through epigenetic mechanisms. In the present study, we investigated such mechanisms through the modification of chromatin architecture induced by flagellin preexposure that results in subsequent changes of gene expression. By conducting an unsupervised approach to jointly analyse chromatin accessibility and gene expression, we mapped the remodelling of the epigenomic and transcriptomic profiles during the establishment of BECs memory. We identified a Memory regulatory profile induced by flagellin exposure. It includes clusters of upregulated genes related to inflammation that are linked to a sustainable gain in chromatin accessibility and with an increased activity of specific transcription factors (TFs) whose binding may drive this process. In summary, we demonstrated that flagellin exposure induced changes in chromatin condensation in BECs, which sustains the reprogramming of transcriptional patterns.
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- Language
- en
- Landing Page
- https://doi.org/10.1038/s41435-025-00357-z
- https://www.nature.com/articles/s41435-025-00357-z.pdf
- OA Status
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- 50
- OpenAlex ID
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- DOI
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https://doi.org/10.1038/s41435-025-00357-zDigital Object Identifier
- Title
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The epigenomic landscape of bronchial epithelial cells reveals the establishment of trained immunityWork title
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articleOpenAlex work type
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-09-24Full publication date if available
- Authors
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Jeanne Bigot, Rachel Legendre, Juliette Hamroune, Sébastien Jacques, Mathieu Le Gars, Nicolas Millet, Loïc Guillot, Harriet Corvol, Christophe Hennequin, J. Guitard, Jean‐Yves Coppée, Viviane Balloy, Claudia ChicaList of authors in order
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https://doi.org/10.1038/s41435-025-00357-zPublisher landing page
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https://www.nature.com/articles/s41435-025-00357-z.pdfDirect link to full text PDF
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hybridOpen access status per OpenAlex
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https://www.nature.com/articles/s41435-025-00357-z.pdfDirect OA link when available
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| abstract_inverted_index.ability | 10 |
| abstract_inverted_index.analyse | 109 |
| abstract_inverted_index.binding | 171 |
| abstract_inverted_index.capable | 62 |
| abstract_inverted_index.changes | 98, 184 |
| abstract_inverted_index.defence | 41 |
| abstract_inverted_index.factors | 168 |
| abstract_inverted_index.induced | 90, 137, 183 |
| abstract_inverted_index.inhaled | 54 |
| abstract_inverted_index.jointly | 108 |
| abstract_inverted_index.memory, | 2 |
| abstract_inverted_index.memory. | 130 |
| abstract_inverted_index.present | 78 |
| abstract_inverted_index.profile | 136 |
| abstract_inverted_index.related | 147 |
| abstract_inverted_index.results | 95 |
| abstract_inverted_index.through | 73, 84 |
| abstract_inverted_index.trained | 5 |
| abstract_inverted_index.activity | 164 |
| abstract_inverted_index.approach | 106 |
| abstract_inverted_index.clusters | 143 |
| abstract_inverted_index.exposure | 182 |
| abstract_inverted_index.includes | 142 |
| abstract_inverted_index.modified | 26 |
| abstract_inverted_index.process. | 175 |
| abstract_inverted_index.profiles | 124 |
| abstract_inverted_index.recently | 57 |
| abstract_inverted_index.response | 28 |
| abstract_inverted_index.specific | 166 |
| abstract_inverted_index.summary, | 177 |
| abstract_inverted_index.sustains | 191 |
| abstract_inverted_index.Bronchial | 33 |
| abstract_inverted_index.chromatin | 88, 110, 158, 186 |
| abstract_inverted_index.encounter | 53 |
| abstract_inverted_index.exposure. | 140 |
| abstract_inverted_index.flagellin | 72, 92, 139, 181 |
| abstract_inverted_index.immunity, | 6 |
| abstract_inverted_index.increased | 163 |
| abstract_inverted_index.patterns. | 196 |
| abstract_inverted_index.resulting | 22 |
| abstract_inverted_index.secondary | 30 |
| abstract_inverted_index.transient | 20 |
| abstract_inverted_index.aeruginosa | 71 |
| abstract_inverted_index.challenge. | 32 |
| abstract_inverted_index.conducting | 103 |
| abstract_inverted_index.epigenetic | 74 |
| abstract_inverted_index.epigenomic | 121 |
| abstract_inverted_index.epithelial | 34 |
| abstract_inverted_index.identified | 132 |
| abstract_inverted_index.mechanisms | 83 |
| abstract_inverted_index.pathogens. | 55 |
| abstract_inverted_index.regulatory | 135 |
| abstract_inverted_index.subsequent | 97 |
| abstract_inverted_index.Pseudomonas | 70 |
| abstract_inverted_index.expression, | 114 |
| abstract_inverted_index.expression. | 101 |
| abstract_inverted_index.mechanisms. | 75 |
| abstract_inverted_index.nonspecific | 25 |
| abstract_inverted_index.participate | 37 |
| abstract_inverted_index.preexposure | 68, 93 |
| abstract_inverted_index.remodelling | 118 |
| abstract_inverted_index.respiratory | 50 |
| abstract_inverted_index.sustainable | 155 |
| abstract_inverted_index.upregulated | 145 |
| abstract_inverted_index.architecture | 89 |
| abstract_inverted_index.condensation | 187 |
| abstract_inverted_index.demonstrated | 179 |
| abstract_inverted_index.inflammation | 149 |
| abstract_inverted_index.inflammatory | 27 |
| abstract_inverted_index.investigated | 81 |
| abstract_inverted_index.modification | 86 |
| abstract_inverted_index.stimulation, | 21 |
| abstract_inverted_index.unsupervised | 105 |
| abstract_inverted_index.accessibility | 111, 159 |
| abstract_inverted_index.establishment | 127 |
| abstract_inverted_index.reprogramming | 193 |
| abstract_inverted_index.transcription | 167 |
| abstract_inverted_index.transcriptomic | 123 |
| abstract_inverted_index.characteristics | 18 |
| abstract_inverted_index.transcriptional | 195 |
| cited_by_percentile_year | |
| countries_distinct_count | 1 |
| institutions_distinct_count | 13 |
| citation_normalized_percentile.value | 0.49369645 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |