The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 Article Swipe
Jonathan E. Pekar
,
Andrew F. Magee
,
Edyth Parker
,
Niema Moshiri
,
Katherine Izhikevich
,
Jennifer L. Havens
,
Karthik Gangavarapu
,
Lorena M. Malpica Serrano
,
Alexander Crits‐Christoph
,
Nathaniel L. Matteson
,
Mark Zeller
,
Joshua I. Levy
,
Jade Wang
,
Scott Hughes
,
Jungmin Lee
,
Heedo Park
,
Man‐Seong Park
,
Katherine Ching Zi Yan
,
Raymond Tzer Pin Lin
,
Mohd Noor Mat Isa
,
Yusuf Muhammad Noor
,
Tetyana I. Vasylyeva
,
Robert F. Garry
,
Edward C. Holmes
,
Andrew Rambaut
,
Marc A. Suchard
,
Kristian G. Andersen
,
Michael Worobey
,
Joel O. Wertheim
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1126/science.abp8337
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1126/science.abp8337
Understanding the circumstances that lead to pandemics is important for their prevention. We analyzed the genomic diversity of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) early in the coronavirus disease 2019 (COVID-19) pandemic. We show that SARS-CoV-2 genomic diversity before February 2020 likely comprised only two distinct viral lineages, denoted “A” and “B.” Phylodynamic rooting methods, coupled with epidemic simulations, reveal that these lineages were most probably the result of at least two separate cross-species transmission events into humans. The first zoonotic transmission likely involved lineage B viruses around 18 November 2019 (23 October to 8 December), and the separate introduction of lineage A likely occurred within weeks of this event. These findings indicate that it is unlikely that SARS-CoV-2 circulated widely in humans before November 2019 and define the narrow window between when SARS-CoV-2 first jumped into humans and when the first cases of COVID-19 were reported. As with other coronaviruses, SARS-CoV-2 emergence likely resulted from multiple zoonotic events.
Related Topics
Concepts
Pandemic
Transmission (telecommunications)
Lineage (genetic)
Coronavirus
Biology
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Virology
Coronavirus disease 2019 (COVID-19)
Molecular epidemiology
Betacoronavirus
2019-20 coronavirus outbreak
Middle East respiratory syndrome coronavirus
Evolutionary biology
Outbreak
Disease
Genetics
Medicine
Infectious disease (medical specialty)
Genotype
Gene
Electrical engineering
Pathology
Engineering
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1126/science.abp8337
- OA Status
- gold
- Cited By
- 233
- References
- 94
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4288035028
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4288035028Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1126/science.abp8337Digital Object Identifier
- Title
-
The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2Work title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-07-26Full publication date if available
- Authors
-
Jonathan E. Pekar, Andrew F. Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L. Havens, Karthik Gangavarapu, Lorena M. Malpica Serrano, Alexander Crits‐Christoph, Nathaniel L. Matteson, Mark Zeller, Joshua I. Levy, Jade Wang, Scott Hughes, Jungmin Lee, Heedo Park, Man‐Seong Park, Katherine Ching Zi Yan, Raymond Tzer Pin Lin, Mohd Noor Mat Isa, Yusuf Muhammad Noor, Tetyana I. Vasylyeva, Robert F. Garry, Edward C. Holmes, Andrew Rambaut, Marc A. Suchard, Kristian G. Andersen, Michael Worobey, Joel O. WertheimList of authors in order
- Landing page
-
https://doi.org/10.1126/science.abp8337Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://escholarship.org/content/qt2sz9s0gw/qt2sz9s0gw.pdfDirect OA link when available
- Concepts
-
Pandemic, Transmission (telecommunications), Lineage (genetic), Coronavirus, Biology, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Virology, Coronavirus disease 2019 (COVID-19), Molecular epidemiology, Betacoronavirus, 2019-20 coronavirus outbreak, Middle East respiratory syndrome coronavirus, Evolutionary biology, Outbreak, Disease, Genetics, Medicine, Infectious disease (medical specialty), Genotype, Gene, Electrical engineering, Pathology, EngineeringTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
233Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 40, 2024: 62, 2023: 93, 2022: 36, 2021: 1Per-year citation counts (last 5 years)
- References (count)
-
94Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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