Transcriptomic analysis reveals role of lncRNA LOC100257036 to regulate AGAMOUS during cluster compactness of Vitis vinifera cv. sistan yaghooti Article Swipe
Seyedeh Saeideh Sahraei
,
Nafiseh Mahdinezhad
,
Abbasali Emamjomeh
,
Kaveh Kavousi
,
Mahmood Solouki
,
Massimo Delledonne
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1038/s41598-024-79890-2
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1038/s41598-024-79890-2
Yaghooti grape, as the earliest grape variety in Iran, is considered as more resistant to heat, drought, and salinity than other cultivars. Cluster compactness is regarded as an inappropriate feature for the productivity of Yaghooti grape as a critical commercial and nutritional product. In plants, lncRNAs play a critical role in regulating biological processes related to growth and development. However, the potential role of lncRNAs was not assessed in cluster compactness. Totally, 1549 lncRNAs were identified by RNA-Seq data analysis in three steps of cluster formation, berry formation, and final cluster size after a thorough screening process. In addition, 229 lncRNAs were differentially expressed in the cluster development steps. Based on the functional analysis, lncRNAs are related to AG and MYB, bHLH, LBD, NAC, and WRKY TFs. Further, the target genes enrichment analysis revealed a relationship between lncRNAs with grape growth and development, as well as resistance to abiotic stresses such as heat and drought, plant defense against pathogens, and early grapes ripening. The study identified four lncRNAs as precursors of miRNAs, predicting that 112 other lncRNAs could potentially be targeted by 166 miRNAs. The results provide new insights into the regulatory functions of lncRNAs in Yaghooti grape to improve overall understanding of the molecular mechanisms related to grape compactness.
Related Topics
Concepts
Transcriptome
Biology
Computational biology
WRKY protein domain
Genetics
Biotechnology
Gene
Gene expression
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1038/s41598-024-79890-2
- OA Status
- gold
- Cited By
- 3
- References
- 102
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4404436357
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4404436357Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1038/s41598-024-79890-2Digital Object Identifier
- Title
-
Transcriptomic analysis reveals role of lncRNA LOC100257036 to regulate AGAMOUS during cluster compactness of Vitis vinifera cv. sistan yaghootiWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-11-16Full publication date if available
- Authors
-
Seyedeh Saeideh Sahraei, Nafiseh Mahdinezhad, Abbasali Emamjomeh, Kaveh Kavousi, Mahmood Solouki, Massimo DelledonneList of authors in order
- Landing page
-
https://doi.org/10.1038/s41598-024-79890-2Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.1038/s41598-024-79890-2Direct OA link when available
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Transcriptome, Biology, Computational biology, WRKY protein domain, Genetics, Biotechnology, Gene, Gene expressionTop concepts (fields/topics) attached by OpenAlex
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3Total citation count in OpenAlex
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2025: 3Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.resistance | 146 |
| abstract_inverted_index.compactness | 23 |
| abstract_inverted_index.development | 107 |
| abstract_inverted_index.nutritional | 41 |
| abstract_inverted_index.potentially | 178 |
| abstract_inverted_index.compactness. | 70, 209 |
| abstract_inverted_index.development, | 142 |
| abstract_inverted_index.development. | 58 |
| abstract_inverted_index.productivity | 32 |
| abstract_inverted_index.relationship | 135 |
| abstract_inverted_index.inappropriate | 28 |
| abstract_inverted_index.understanding | 201 |
| abstract_inverted_index.differentially | 102 |
| cited_by_percentile_year.max | 97 |
| cited_by_percentile_year.min | 96 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 6 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/2 |
| sustainable_development_goals[0].score | 0.7300000190734863 |
| sustainable_development_goals[0].display_name | Zero hunger |
| citation_normalized_percentile.value | 0.80523453 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |