TwinBLAST: When Two Is Better than One Article Swipe
Julie C. Dunning Hotopp
,
James Matsumura
,
Robin E. Bromley
,
David R. Riley
,
Sonia Agrawal
,
Ben Sparklin
,
John Mattick
,
Jonathan Crabtree
,
Anup Mahurkar
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1128/mra.00842-19
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1128/mra.00842-19
Analysis of sequence read pairs can be essential for characterizing structural variation, including junction-spanning pairs of reads (JSPRs) suggesting recent lateral/horizontal gene transfer. TwinBLAST can be used to facilitate this analysis of JSPRs by enabling the visualization and curation of two BLAST reports side by side in a single interface.
Related Topics
Concepts
Visualization
Computer science
Variation (astronomy)
Sequence (biology)
Interface (matter)
Transfer (computing)
Horizontal gene transfer
Artificial intelligence
Biology
Gene
Genetics
Physics
Parallel computing
Phylogenetics
Astrophysics
Bubble
Maximum bubble pressure method
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1128/mra.00842-19
- https://mra.asm.org/content/ga/8/35/e00842-19.full.pdf
- OA Status
- diamond
- Cited By
- 1
- References
- 16
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2970713723
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2970713723Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1128/mra.00842-19Digital Object Identifier
- Title
-
TwinBLAST: When Two Is Better than OneWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2019Year of publication
- Publication date
-
2019-08-28Full publication date if available
- Authors
-
Julie C. Dunning Hotopp, James Matsumura, Robin E. Bromley, David R. Riley, Sonia Agrawal, Ben Sparklin, John Mattick, Jonathan Crabtree, Anup MahurkarList of authors in order
- Landing page
-
https://doi.org/10.1128/mra.00842-19Publisher landing page
- PDF URL
-
https://mra.asm.org/content/ga/8/35/e00842-19.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
diamondOpen access status per OpenAlex
- OA URL
-
https://mra.asm.org/content/ga/8/35/e00842-19.full.pdfDirect OA link when available
- Concepts
-
Visualization, Computer science, Variation (astronomy), Sequence (biology), Interface (matter), Transfer (computing), Horizontal gene transfer, Artificial intelligence, Biology, Gene, Genetics, Physics, Parallel computing, Phylogenetics, Astrophysics, Bubble, Maximum bubble pressure methodTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
1Total citation count in OpenAlex
- Citations by year (recent)
-
2020: 1Per-year citation counts (last 5 years)
- References (count)
-
16Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W2970713723 |
|---|---|
| doi | https://doi.org/10.1128/mra.00842-19 |
| ids.doi | https://doi.org/10.1128/mra.00842-19 |
| ids.mag | 2970713723 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/31467106 |
| ids.openalex | https://openalex.org/W2970713723 |
| fwci | 0.10305101 |
| type | article |
| title | TwinBLAST: When Two Is Better than One |
| awards[0].id | https://openalex.org/G833612693 |
| awards[0].funder_id | https://openalex.org/F4320337351 |
| awards[0].display_name | |
| awards[0].funder_award_id | R01CA206188 |
| awards[0].funder_display_name | National Cancer Institute |
| awards[1].id | https://openalex.org/G4477909845 |
| awards[1].funder_id | https://openalex.org/F4320335353 |
| awards[1].display_name | |
| awards[1].funder_award_id | ABI1457957 |
| awards[1].funder_display_name | National Science Foundation of Sri Lanka |
| awards[2].id | https://openalex.org/G7377211099 |
| awards[2].funder_id | https://openalex.org/F4320337349 |
| awards[2].display_name | |
| awards[2].funder_award_id | 1-DP2-OD007372 |
| awards[2].funder_display_name | NIH Office of the Director |
| biblio.issue | 35 |
| biblio.volume | 8 |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T10521 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9976000189781189 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | RNA and protein synthesis mechanisms |
| topics[1].id | https://openalex.org/T10015 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.993399977684021 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1312 |
| topics[1].subfield.display_name | Molecular Biology |
| topics[1].display_name | Genomics and Phylogenetic Studies |
| topics[2].id | https://openalex.org/T12134 |
| topics[2].field.id | https://openalex.org/fields/11 |
| topics[2].field.display_name | Agricultural and Biological Sciences |
| topics[2].score | 0.9930999875068665 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1109 |
| topics[2].subfield.display_name | Insect Science |
| topics[2].display_name | Insect symbiosis and bacterial influences |
| funders[0].id | https://openalex.org/F4320335353 |
| funders[0].ror | https://ror.org/010xaa060 |
| funders[0].display_name | National Science Foundation of Sri Lanka |
| funders[1].id | https://openalex.org/F4320337349 |
| funders[1].ror | https://ror.org/00fj8a872 |
| funders[1].display_name | NIH Office of the Director |
| funders[2].id | https://openalex.org/F4320337351 |
| funders[2].ror | https://ror.org/040gcmg81 |
| funders[2].display_name | National Cancer Institute |
| is_xpac | False |
| apc_list | |
| apc_paid | |
| concepts[0].id | https://openalex.org/C36464697 |
| concepts[0].level | 2 |
| concepts[0].score | 0.6522057056427002 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q451553 |
| concepts[0].display_name | Visualization |
| concepts[1].id | https://openalex.org/C41008148 |
| concepts[1].level | 0 |
| concepts[1].score | 0.5538526773452759 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[1].display_name | Computer science |
| concepts[2].id | https://openalex.org/C2778334786 |
| concepts[2].level | 2 |
| concepts[2].score | 0.5114132761955261 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q1586270 |
| concepts[2].display_name | Variation (astronomy) |
| concepts[3].id | https://openalex.org/C2778112365 |
| concepts[3].level | 2 |
| concepts[3].score | 0.4716830849647522 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q3511065 |
| concepts[3].display_name | Sequence (biology) |
| concepts[4].id | https://openalex.org/C113843644 |
| concepts[4].level | 4 |
| concepts[4].score | 0.4639168977737427 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q901882 |
| concepts[4].display_name | Interface (matter) |
| concepts[5].id | https://openalex.org/C2776175482 |
| concepts[5].level | 2 |
| concepts[5].score | 0.4619915783405304 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q1195816 |
| concepts[5].display_name | Transfer (computing) |
| concepts[6].id | https://openalex.org/C92938381 |
| concepts[6].level | 4 |
| concepts[6].score | 0.42137929797172546 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q83185 |
| concepts[6].display_name | Horizontal gene transfer |
| concepts[7].id | https://openalex.org/C154945302 |
| concepts[7].level | 1 |
| concepts[7].score | 0.2639462947845459 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[7].display_name | Artificial intelligence |
| concepts[8].id | https://openalex.org/C86803240 |
| concepts[8].level | 0 |
| concepts[8].score | 0.24257373809814453 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[8].display_name | Biology |
| concepts[9].id | https://openalex.org/C104317684 |
| concepts[9].level | 2 |
| concepts[9].score | 0.17177125811576843 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[9].display_name | Gene |
| concepts[10].id | https://openalex.org/C54355233 |
| concepts[10].level | 1 |
| concepts[10].score | 0.14306598901748657 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[10].display_name | Genetics |
| concepts[11].id | https://openalex.org/C121332964 |
| concepts[11].level | 0 |
| concepts[11].score | 0.11069193482398987 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q413 |
| concepts[11].display_name | Physics |
| concepts[12].id | https://openalex.org/C173608175 |
| concepts[12].level | 1 |
| concepts[12].score | 0.10088029503822327 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q232661 |
| concepts[12].display_name | Parallel computing |
| concepts[13].id | https://openalex.org/C90132467 |
| concepts[13].level | 3 |
| concepts[13].score | 0.09609410166740417 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q171184 |
| concepts[13].display_name | Phylogenetics |
| concepts[14].id | https://openalex.org/C44870925 |
| concepts[14].level | 1 |
| concepts[14].score | 0.057041287422180176 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q37547 |
| concepts[14].display_name | Astrophysics |
| concepts[15].id | https://openalex.org/C157915830 |
| concepts[15].level | 2 |
| concepts[15].score | 0.0 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q2928001 |
| concepts[15].display_name | Bubble |
| concepts[16].id | https://openalex.org/C129307140 |
| concepts[16].level | 3 |
| concepts[16].score | 0.0 |
| concepts[16].wikidata | https://www.wikidata.org/wiki/Q6795880 |
| concepts[16].display_name | Maximum bubble pressure method |
| keywords[0].id | https://openalex.org/keywords/visualization |
| keywords[0].score | 0.6522057056427002 |
| keywords[0].display_name | Visualization |
| keywords[1].id | https://openalex.org/keywords/computer-science |
| keywords[1].score | 0.5538526773452759 |
| keywords[1].display_name | Computer science |
| keywords[2].id | https://openalex.org/keywords/variation |
| keywords[2].score | 0.5114132761955261 |
| keywords[2].display_name | Variation (astronomy) |
| keywords[3].id | https://openalex.org/keywords/sequence |
| keywords[3].score | 0.4716830849647522 |
| keywords[3].display_name | Sequence (biology) |
| keywords[4].id | https://openalex.org/keywords/interface |
| keywords[4].score | 0.4639168977737427 |
| keywords[4].display_name | Interface (matter) |
| keywords[5].id | https://openalex.org/keywords/transfer |
| keywords[5].score | 0.4619915783405304 |
| keywords[5].display_name | Transfer (computing) |
| keywords[6].id | https://openalex.org/keywords/horizontal-gene-transfer |
| keywords[6].score | 0.42137929797172546 |
| keywords[6].display_name | Horizontal gene transfer |
| keywords[7].id | https://openalex.org/keywords/artificial-intelligence |
| keywords[7].score | 0.2639462947845459 |
| keywords[7].display_name | Artificial intelligence |
| keywords[8].id | https://openalex.org/keywords/biology |
| keywords[8].score | 0.24257373809814453 |
| keywords[8].display_name | Biology |
| keywords[9].id | https://openalex.org/keywords/gene |
| keywords[9].score | 0.17177125811576843 |
| keywords[9].display_name | Gene |
| keywords[10].id | https://openalex.org/keywords/genetics |
| keywords[10].score | 0.14306598901748657 |
| keywords[10].display_name | Genetics |
| keywords[11].id | https://openalex.org/keywords/physics |
| keywords[11].score | 0.11069193482398987 |
| keywords[11].display_name | Physics |
| keywords[12].id | https://openalex.org/keywords/parallel-computing |
| keywords[12].score | 0.10088029503822327 |
| keywords[12].display_name | Parallel computing |
| keywords[13].id | https://openalex.org/keywords/phylogenetics |
| keywords[13].score | 0.09609410166740417 |
| keywords[13].display_name | Phylogenetics |
| keywords[14].id | https://openalex.org/keywords/astrophysics |
| keywords[14].score | 0.057041287422180176 |
| keywords[14].display_name | Astrophysics |
| language | en |
| locations[0].id | doi:10.1128/mra.00842-19 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S4210232526 |
| locations[0].source.issn | 2576-098X |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 2576-098X |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | False |
| locations[0].source.display_name | Microbiology Resource Announcements |
| locations[0].source.host_organization | https://openalex.org/P4310320263 |
| locations[0].source.host_organization_name | American Society for Microbiology |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310320263 |
| locations[0].source.host_organization_lineage_names | American Society for Microbiology |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://mra.asm.org/content/ga/8/35/e00842-19.full.pdf |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | Microbiology Resource Announcements |
| locations[0].landing_page_url | https://doi.org/10.1128/mra.00842-19 |
| locations[1].id | pmid:31467106 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Microbiology resource announcements |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/31467106 |
| locations[2].id | pmh:oai:pubmedcentral.nih.gov:6715876 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S2764455111 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | PubMed Central |
| locations[2].source.host_organization | https://openalex.org/I1299303238 |
| locations[2].source.host_organization_name | National Institutes of Health |
| locations[2].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[2].license | cc-by |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | Text |
| locations[2].license_id | https://openalex.org/licenses/cc-by |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | Microbiol Resour Announc |
| locations[2].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/6715876 |
| indexed_in | crossref, pubmed |
| authorships[0].author.id | https://openalex.org/A5024171828 |
| authorships[0].author.orcid | https://orcid.org/0000-0003-3862-986X |
| authorships[0].author.display_name | Julie C. Dunning Hotopp |
| authorships[0].countries | US |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[0].affiliations[0].raw_affiliation_string | Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[0].affiliations[1].institution_ids | https://openalex.org/I126744593, https://openalex.org/I4390039285 |
| authorships[0].affiliations[1].raw_affiliation_string | Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[0].affiliations[2].institution_ids | https://openalex.org/I126744593 |
| authorships[0].affiliations[2].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[0].institutions[0].id | https://openalex.org/I4390039285 |
| authorships[0].institutions[0].ror | https://ror.org/05asdy483 |
| authorships[0].institutions[0].type | healthcare |
| authorships[0].institutions[0].lineage | https://openalex.org/I4210114445, https://openalex.org/I4390039285 |
| authorships[0].institutions[0].country_code | |
| authorships[0].institutions[0].display_name | U-M Rogel Cancer Center |
| authorships[0].institutions[1].id | https://openalex.org/I126744593 |
| authorships[0].institutions[1].ror | https://ror.org/04rq5mt64 |
| authorships[0].institutions[1].type | education |
| authorships[0].institutions[1].lineage | https://openalex.org/I126744593 |
| authorships[0].institutions[1].country_code | US |
| authorships[0].institutions[1].display_name | University of Maryland, Baltimore |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Julie C. Dunning Hotopp |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA, Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, Maryland, USA, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[1].author.id | https://openalex.org/A5009665848 |
| authorships[1].author.orcid | |
| authorships[1].author.display_name | James Matsumura |
| authorships[1].countries | US |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[1].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[1].institutions[0].id | https://openalex.org/I126744593 |
| authorships[1].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[1].institutions[0].country_code | US |
| authorships[1].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | James Matsumura |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[2].author.id | https://openalex.org/A5040542011 |
| authorships[2].author.orcid | https://orcid.org/0000-0003-2738-2603 |
| authorships[2].author.display_name | Robin E. Bromley |
| authorships[2].countries | US |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[2].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[2].institutions[0].id | https://openalex.org/I126744593 |
| authorships[2].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[2].institutions[0].country_code | US |
| authorships[2].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Robin E. Bromley |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[3].author.id | https://openalex.org/A5001785282 |
| authorships[3].author.orcid | https://orcid.org/0000-0002-0905-6524 |
| authorships[3].author.display_name | David R. Riley |
| authorships[3].countries | US |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[3].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[3].institutions[0].id | https://openalex.org/I126744593 |
| authorships[3].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[3].institutions[0].country_code | US |
| authorships[3].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | David R. Riley |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[4].author.id | https://openalex.org/A5020656777 |
| authorships[4].author.orcid | https://orcid.org/0000-0003-4484-7433 |
| authorships[4].author.display_name | Sonia Agrawal |
| authorships[4].countries | US |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[4].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[4].institutions[0].id | https://openalex.org/I126744593 |
| authorships[4].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[4].institutions[0].country_code | US |
| authorships[4].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Sonia Agrawal |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[5].author.id | https://openalex.org/A5054582294 |
| authorships[5].author.orcid | |
| authorships[5].author.display_name | Ben Sparklin |
| authorships[5].countries | US |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[5].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[5].institutions[0].id | https://openalex.org/I126744593 |
| authorships[5].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[5].institutions[0].country_code | US |
| authorships[5].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Ben Sparklin |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[6].author.id | https://openalex.org/A5103021108 |
| authorships[6].author.orcid | https://orcid.org/0000-0002-8743-1158 |
| authorships[6].author.display_name | John Mattick |
| authorships[6].countries | US |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[6].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[6].institutions[0].id | https://openalex.org/I126744593 |
| authorships[6].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[6].institutions[0].country_code | US |
| authorships[6].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | John Mattick |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[7].author.id | https://openalex.org/A5036572017 |
| authorships[7].author.orcid | https://orcid.org/0000-0002-7286-5690 |
| authorships[7].author.display_name | Jonathan Crabtree |
| authorships[7].countries | US |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[7].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[7].institutions[0].id | https://openalex.org/I126744593 |
| authorships[7].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[7].institutions[0].type | education |
| authorships[7].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[7].institutions[0].country_code | US |
| authorships[7].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Jonathan Crabtree |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[8].author.id | https://openalex.org/A5012899754 |
| authorships[8].author.orcid | https://orcid.org/0000-0002-4999-2296 |
| authorships[8].author.display_name | Anup Mahurkar |
| authorships[8].countries | US |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I126744593 |
| authorships[8].affiliations[0].raw_affiliation_string | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| authorships[8].institutions[0].id | https://openalex.org/I126744593 |
| authorships[8].institutions[0].ror | https://ror.org/04rq5mt64 |
| authorships[8].institutions[0].type | education |
| authorships[8].institutions[0].lineage | https://openalex.org/I126744593 |
| authorships[8].institutions[0].country_code | US |
| authorships[8].institutions[0].display_name | University of Maryland, Baltimore |
| authorships[8].author_position | last |
| authorships[8].raw_author_name | Anup Mahurkar |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://mra.asm.org/content/ga/8/35/e00842-19.full.pdf |
| open_access.oa_status | diamond |
| open_access.any_repository_has_fulltext | False |
| created_date | 2019-09-05T00:00:00 |
| display_name | TwinBLAST: When Two Is Better than One |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10521 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9976000189781189 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | RNA and protein synthesis mechanisms |
| related_works | https://openalex.org/W2386430105, https://openalex.org/W2356521405, https://openalex.org/W2264917134, https://openalex.org/W2038534795, https://openalex.org/W2505308311, https://openalex.org/W2384358604, https://openalex.org/W4249861864, https://openalex.org/W1567829292, https://openalex.org/W3001063351, https://openalex.org/W2036568767 |
| cited_by_count | 1 |
| counts_by_year[0].year | 2020 |
| counts_by_year[0].cited_by_count | 1 |
| locations_count | 3 |
| best_oa_location.id | doi:10.1128/mra.00842-19 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S4210232526 |
| best_oa_location.source.issn | 2576-098X |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 2576-098X |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | False |
| best_oa_location.source.display_name | Microbiology Resource Announcements |
| best_oa_location.source.host_organization | https://openalex.org/P4310320263 |
| best_oa_location.source.host_organization_name | American Society for Microbiology |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310320263 |
| best_oa_location.source.host_organization_lineage_names | American Society for Microbiology |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://mra.asm.org/content/ga/8/35/e00842-19.full.pdf |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | Microbiology Resource Announcements |
| best_oa_location.landing_page_url | https://doi.org/10.1128/mra.00842-19 |
| primary_location.id | doi:10.1128/mra.00842-19 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S4210232526 |
| primary_location.source.issn | 2576-098X |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 2576-098X |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | False |
| primary_location.source.display_name | Microbiology Resource Announcements |
| primary_location.source.host_organization | https://openalex.org/P4310320263 |
| primary_location.source.host_organization_name | American Society for Microbiology |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310320263 |
| primary_location.source.host_organization_lineage_names | American Society for Microbiology |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://mra.asm.org/content/ga/8/35/e00842-19.full.pdf |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | Microbiology Resource Announcements |
| primary_location.landing_page_url | https://doi.org/10.1128/mra.00842-19 |
| publication_date | 2019-08-28 |
| publication_year | 2019 |
| referenced_works | https://openalex.org/W1971158963, https://openalex.org/W2064003510, https://openalex.org/W2140560927, https://openalex.org/W2160522424, https://openalex.org/W2137715204, https://openalex.org/W2133941155, https://openalex.org/W2120640222, https://openalex.org/W2117995870, https://openalex.org/W2083922582, https://openalex.org/W2055043387, https://openalex.org/W2150934173, https://openalex.org/W2116816847, https://openalex.org/W2038357425, https://openalex.org/W2008430614, https://openalex.org/W2114604021, https://openalex.org/W2103441770 |
| referenced_works_count | 16 |
| abstract_inverted_index.a | 47 |
| abstract_inverted_index.be | 6, 25 |
| abstract_inverted_index.by | 33, 44 |
| abstract_inverted_index.in | 46 |
| abstract_inverted_index.of | 1, 15, 31, 39 |
| abstract_inverted_index.to | 27 |
| abstract_inverted_index.and | 37 |
| abstract_inverted_index.can | 5, 24 |
| abstract_inverted_index.for | 8 |
| abstract_inverted_index.the | 35 |
| abstract_inverted_index.two | 40 |
| abstract_inverted_index.gene | 21 |
| abstract_inverted_index.read | 3 |
| abstract_inverted_index.side | 43, 45 |
| abstract_inverted_index.this | 29 |
| abstract_inverted_index.used | 26 |
| abstract_inverted_index.BLAST | 41 |
| abstract_inverted_index.JSPRs | 32 |
| abstract_inverted_index.pairs | 4, 14 |
| abstract_inverted_index.reads | 16 |
| abstract_inverted_index.recent | 19 |
| abstract_inverted_index.single | 48 |
| abstract_inverted_index.(JSPRs) | 17 |
| abstract_inverted_index.reports | 42 |
| abstract_inverted_index.Analysis | 0 |
| abstract_inverted_index.analysis | 30 |
| abstract_inverted_index.curation | 38 |
| abstract_inverted_index.enabling | 34 |
| abstract_inverted_index.sequence | 2 |
| abstract_inverted_index.TwinBLAST | 23 |
| abstract_inverted_index.essential | 7 |
| abstract_inverted_index.including | 12 |
| abstract_inverted_index.transfer. | 22 |
| abstract_inverted_index.facilitate | 28 |
| abstract_inverted_index.interface. | 49 |
| abstract_inverted_index.structural | 10 |
| abstract_inverted_index.suggesting | 18 |
| abstract_inverted_index.variation, | 11 |
| abstract_inverted_index.visualization | 36 |
| abstract_inverted_index.characterizing | 9 |
| abstract_inverted_index.junction-spanning | 13 |
| abstract_inverted_index.lateral/horizontal | 20 |
| cited_by_percentile_year.max | 94 |
| cited_by_percentile_year.min | 89 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 9 |
| citation_normalized_percentile.value | 0.47532764 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |