TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy Article Swipe
Jan P. Meier‐Kolthoff
,
Markus Göker
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1038/s41467-019-10210-3
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1038/s41467-019-10210-3
Microbial taxonomy is increasingly influenced by genome-based computational methods. Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS, the Type (Strain) Genome Server, a user-friendly high-throughput web server for genome-based prokaryote taxonomy, connected to a large, continuously growing database of genomic, taxonomic and nomenclatural information. It infers genome-scale phylogenies and state-of-the-art estimates for species and subspecies boundaries from user-defined and automatically determined closest type genome sequences. TYGS also provides comprehensive access to nomenclature, synonymy and associated taxonomic literature. Clinically important examples demonstrate how TYGS can yield new insights into microbial classification, such as evidence for a species-level separation of previously proposed subspecies of Salmonella enterica . TYGS is an integrated approach for the classification of microbes that unlocks novel scientific approaches to microbiologists worldwide and is particularly helpful for the rapidly expanding field of genome-based taxonomic descriptions of new genera, species or subspecies.
Related Topics
Concepts
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1038/s41467-019-10210-3
- https://www.nature.com/articles/s41467-019-10210-3.pdf
- OA Status
- gold
- Cited By
- 2784
- References
- 73
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2946204549
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2946204549Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1038/s41467-019-10210-3Digital Object Identifier
- Title
-
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomyWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2019Year of publication
- Publication date
-
2019-05-16Full publication date if available
- Authors
-
Jan P. Meier‐Kolthoff, Markus GökerList of authors in order
- Landing page
-
https://doi.org/10.1038/s41467-019-10210-3Publisher landing page
- PDF URL
-
https://www.nature.com/articles/s41467-019-10210-3.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.nature.com/articles/s41467-019-10210-3.pdfDirect OA link when available
- Concepts
-
Subspecies, Genome, Taxonomy (biology), Prokaryote, Biology, Genomics, Computational biology, Computer science, Evolutionary biology, Ecology, Genetics, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
2784Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 582, 2024: 615, 2023: 547, 2022: 435, 2021: 345Per-year citation counts (last 5 years)
- References (count)
-
73Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W2946204549 |
|---|---|
| doi | https://doi.org/10.1038/s41467-019-10210-3 |
| ids.doi | https://doi.org/10.1038/s41467-019-10210-3 |
| ids.mag | 2946204549 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/31097708 |
| ids.openalex | https://openalex.org/W2946204549 |
| fwci | 106.34863994 |
| mesh[0].qualifier_ui | Q000145 |
| mesh[0].descriptor_ui | D001105 |
| mesh[0].is_major_topic | False |
| mesh[0].qualifier_name | classification |
| mesh[0].descriptor_name | Archaea |
| mesh[1].qualifier_ui | Q000235 |
| mesh[1].descriptor_ui | D001105 |
| mesh[1].is_major_topic | False |
| mesh[1].qualifier_name | genetics |
| mesh[1].descriptor_name | Archaea |
| mesh[2].qualifier_ui | Q000145 |
| mesh[2].descriptor_ui | D001419 |
| mesh[2].is_major_topic | False |
| mesh[2].qualifier_name | classification |
| mesh[2].descriptor_name | Bacteria |
| mesh[3].qualifier_ui | Q000235 |
| mesh[3].descriptor_ui | D001419 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | genetics |
| mesh[3].descriptor_name | Bacteria |
| mesh[4].qualifier_ui | |
| mesh[4].descriptor_ui | D030541 |
| mesh[4].is_major_topic | True |
| mesh[4].qualifier_name | |
| mesh[4].descriptor_name | Databases, Genetic |
| mesh[5].qualifier_ui | Q000235 |
| mesh[5].descriptor_ui | D020745 |
| mesh[5].is_major_topic | False |
| mesh[5].qualifier_name | genetics |
| mesh[5].descriptor_name | Genome, Archaeal |
| mesh[6].qualifier_ui | Q000235 |
| mesh[6].descriptor_ui | D016680 |
| mesh[6].is_major_topic | False |
| mesh[6].qualifier_name | genetics |
| mesh[6].descriptor_name | Genome, Bacterial |
| mesh[7].qualifier_ui | Q000379 |
| mesh[7].descriptor_ui | D023281 |
| mesh[7].is_major_topic | False |
| mesh[7].qualifier_name | methods |
| mesh[7].descriptor_name | Genomics |
| mesh[8].qualifier_ui | |
| mesh[8].descriptor_ui | D010802 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | |
| mesh[8].descriptor_name | Phylogeny |
| mesh[9].qualifier_ui | Q000145 |
| mesh[9].descriptor_ui | D001105 |
| mesh[9].is_major_topic | False |
| mesh[9].qualifier_name | classification |
| mesh[9].descriptor_name | Archaea |
| mesh[10].qualifier_ui | Q000235 |
| mesh[10].descriptor_ui | D001105 |
| mesh[10].is_major_topic | False |
| mesh[10].qualifier_name | genetics |
| mesh[10].descriptor_name | Archaea |
| mesh[11].qualifier_ui | Q000145 |
| mesh[11].descriptor_ui | D001419 |
| mesh[11].is_major_topic | False |
| mesh[11].qualifier_name | classification |
| mesh[11].descriptor_name | Bacteria |
| mesh[12].qualifier_ui | Q000235 |
| mesh[12].descriptor_ui | D001419 |
| mesh[12].is_major_topic | False |
| mesh[12].qualifier_name | genetics |
| mesh[12].descriptor_name | Bacteria |
| mesh[13].qualifier_ui | |
| mesh[13].descriptor_ui | D030541 |
| mesh[13].is_major_topic | True |
| mesh[13].qualifier_name | |
| mesh[13].descriptor_name | Databases, Genetic |
| mesh[14].qualifier_ui | Q000235 |
| mesh[14].descriptor_ui | D020745 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | genetics |
| mesh[14].descriptor_name | Genome, Archaeal |
| mesh[15].qualifier_ui | Q000235 |
| mesh[15].descriptor_ui | D016680 |
| mesh[15].is_major_topic | False |
| mesh[15].qualifier_name | genetics |
| mesh[15].descriptor_name | Genome, Bacterial |
| mesh[16].qualifier_ui | Q000379 |
| mesh[16].descriptor_ui | D023281 |
| mesh[16].is_major_topic | False |
| mesh[16].qualifier_name | methods |
| mesh[16].descriptor_name | Genomics |
| mesh[17].qualifier_ui | |
| mesh[17].descriptor_ui | D010802 |
| mesh[17].is_major_topic | False |
| mesh[17].qualifier_name | |
| mesh[17].descriptor_name | Phylogeny |
| type | article |
| title | TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy |
| awards[0].id | https://openalex.org/G3722327649 |
| awards[0].funder_id | https://openalex.org/F4320320879 |
| awards[0].display_name | |
| awards[0].funder_award_id | TRR 51 |
| awards[0].funder_display_name | Deutsche Forschungsgemeinschaft |
| biblio.issue | 1 |
| biblio.volume | 10 |
| biblio.last_page | 2182 |
| biblio.first_page | 2182 |
| topics[0].id | https://openalex.org/T10015 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9998999834060669 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | Genomics and Phylogenetic Studies |
| topics[1].id | https://openalex.org/T10486 |
| topics[1].field.id | https://openalex.org/fields/11 |
| topics[1].field.display_name | Agricultural and Biological Sciences |
| topics[1].score | 0.9915000200271606 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1106 |
| topics[1].subfield.display_name | Food Science |
| topics[1].display_name | Salmonella and Campylobacter epidemiology |
| topics[2].id | https://openalex.org/T11791 |
| topics[2].field.id | https://openalex.org/fields/23 |
| topics[2].field.display_name | Environmental Science |
| topics[2].score | 0.9894999861717224 |
| topics[2].domain.id | https://openalex.org/domains/3 |
| topics[2].domain.display_name | Physical Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/2303 |
| topics[2].subfield.display_name | Ecology |
| topics[2].display_name | Microbial Community Ecology and Physiology |
| funders[0].id | https://openalex.org/F4320320879 |
| funders[0].ror | https://ror.org/018mejw64 |
| funders[0].display_name | Deutsche Forschungsgemeinschaft |
| is_xpac | False |
| apc_list.value | 3920 |
| apc_list.currency | GBP |
| apc_list.value_usd | 4808 |
| apc_paid.value | 3920 |
| apc_paid.currency | GBP |
| apc_paid.value_usd | 4808 |
| concepts[0].id | https://openalex.org/C17966761 |
| concepts[0].level | 2 |
| concepts[0].score | 0.7951318025588989 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q68947 |
| concepts[0].display_name | Subspecies |
| concepts[1].id | https://openalex.org/C141231307 |
| concepts[1].level | 3 |
| concepts[1].score | 0.7638113498687744 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q7020 |
| concepts[1].display_name | Genome |
| concepts[2].id | https://openalex.org/C58642233 |
| concepts[2].level | 2 |
| concepts[2].score | 0.7140597701072693 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q8269924 |
| concepts[2].display_name | Taxonomy (biology) |
| concepts[3].id | https://openalex.org/C2780918051 |
| concepts[3].level | 3 |
| concepts[3].score | 0.5029708743095398 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q19081 |
| concepts[3].display_name | Prokaryote |
| concepts[4].id | https://openalex.org/C86803240 |
| concepts[4].level | 0 |
| concepts[4].score | 0.49066007137298584 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[4].display_name | Biology |
| concepts[5].id | https://openalex.org/C189206191 |
| concepts[5].level | 4 |
| concepts[5].score | 0.43718820810317993 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q222046 |
| concepts[5].display_name | Genomics |
| concepts[6].id | https://openalex.org/C70721500 |
| concepts[6].level | 1 |
| concepts[6].score | 0.3831061124801636 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q177005 |
| concepts[6].display_name | Computational biology |
| concepts[7].id | https://openalex.org/C41008148 |
| concepts[7].level | 0 |
| concepts[7].score | 0.3703303635120392 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[7].display_name | Computer science |
| concepts[8].id | https://openalex.org/C78458016 |
| concepts[8].level | 1 |
| concepts[8].score | 0.32896339893341064 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q840400 |
| concepts[8].display_name | Evolutionary biology |
| concepts[9].id | https://openalex.org/C18903297 |
| concepts[9].level | 1 |
| concepts[9].score | 0.1544678807258606 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q7150 |
| concepts[9].display_name | Ecology |
| concepts[10].id | https://openalex.org/C54355233 |
| concepts[10].level | 1 |
| concepts[10].score | 0.14057135581970215 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[10].display_name | Genetics |
| concepts[11].id | https://openalex.org/C104317684 |
| concepts[11].level | 2 |
| concepts[11].score | 0.13494059443473816 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[11].display_name | Gene |
| keywords[0].id | https://openalex.org/keywords/subspecies |
| keywords[0].score | 0.7951318025588989 |
| keywords[0].display_name | Subspecies |
| keywords[1].id | https://openalex.org/keywords/genome |
| keywords[1].score | 0.7638113498687744 |
| keywords[1].display_name | Genome |
| keywords[2].id | https://openalex.org/keywords/taxonomy |
| keywords[2].score | 0.7140597701072693 |
| keywords[2].display_name | Taxonomy (biology) |
| keywords[3].id | https://openalex.org/keywords/prokaryote |
| keywords[3].score | 0.5029708743095398 |
| keywords[3].display_name | Prokaryote |
| keywords[4].id | https://openalex.org/keywords/biology |
| keywords[4].score | 0.49066007137298584 |
| keywords[4].display_name | Biology |
| keywords[5].id | https://openalex.org/keywords/genomics |
| keywords[5].score | 0.43718820810317993 |
| keywords[5].display_name | Genomics |
| keywords[6].id | https://openalex.org/keywords/computational-biology |
| keywords[6].score | 0.3831061124801636 |
| keywords[6].display_name | Computational biology |
| keywords[7].id | https://openalex.org/keywords/computer-science |
| keywords[7].score | 0.3703303635120392 |
| keywords[7].display_name | Computer science |
| keywords[8].id | https://openalex.org/keywords/evolutionary-biology |
| keywords[8].score | 0.32896339893341064 |
| keywords[8].display_name | Evolutionary biology |
| keywords[9].id | https://openalex.org/keywords/ecology |
| keywords[9].score | 0.1544678807258606 |
| keywords[9].display_name | Ecology |
| keywords[10].id | https://openalex.org/keywords/genetics |
| keywords[10].score | 0.14057135581970215 |
| keywords[10].display_name | Genetics |
| keywords[11].id | https://openalex.org/keywords/gene |
| keywords[11].score | 0.13494059443473816 |
| keywords[11].display_name | Gene |
| language | en |
| locations[0].id | doi:10.1038/s41467-019-10210-3 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S64187185 |
| locations[0].source.issn | 2041-1723 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 2041-1723 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | Nature Communications |
| locations[0].source.host_organization | https://openalex.org/P4310319908 |
| locations[0].source.host_organization_name | Nature Portfolio |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310319908, https://openalex.org/P4310319965 |
| locations[0].source.host_organization_lineage_names | Nature Portfolio, Springer Nature |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://www.nature.com/articles/s41467-019-10210-3.pdf |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | Nature Communications |
| locations[0].landing_page_url | https://doi.org/10.1038/s41467-019-10210-3 |
| locations[1].id | pmid:31097708 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Nature communications |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/31097708 |
| locations[2].id | pmh:oai:doaj.org/article:3feb7c508b1649ce86cc16080ab02fd9 |
| locations[2].is_oa | False |
| locations[2].source.id | https://openalex.org/S4306401280 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[2].source.host_organization | |
| locations[2].source.host_organization_name | |
| locations[2].license | |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | article |
| locations[2].license_id | |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019) |
| locations[2].landing_page_url | https://doaj.org/article/3feb7c508b1649ce86cc16080ab02fd9 |
| locations[3].id | pmh:oai:doaj.org/article:700d341cafb64b63a89938cc1eae7616 |
| locations[3].is_oa | True |
| locations[3].source.id | https://openalex.org/S4306401280 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[3].source.host_organization | |
| locations[3].source.host_organization_name | |
| locations[3].license | cc-by-sa |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | article |
| locations[3].license_id | https://openalex.org/licenses/cc-by-sa |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019) |
| locations[3].landing_page_url | https://doaj.org/article/700d341cafb64b63a89938cc1eae7616 |
| locations[4].id | pmh:oai:pubmedcentral.nih.gov:6522516 |
| locations[4].is_oa | True |
| locations[4].source.id | https://openalex.org/S2764455111 |
| locations[4].source.issn | |
| locations[4].source.type | repository |
| locations[4].source.is_oa | False |
| locations[4].source.issn_l | |
| locations[4].source.is_core | False |
| locations[4].source.is_in_doaj | False |
| locations[4].source.display_name | PubMed Central |
| locations[4].source.host_organization | https://openalex.org/I1299303238 |
| locations[4].source.host_organization_name | National Institutes of Health |
| locations[4].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[4].license | other-oa |
| locations[4].pdf_url | |
| locations[4].version | submittedVersion |
| locations[4].raw_type | Text |
| locations[4].license_id | https://openalex.org/licenses/other-oa |
| locations[4].is_accepted | False |
| locations[4].is_published | False |
| locations[4].raw_source_name | Nat Commun |
| locations[4].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/6522516 |
| locations[5].id | pmh:oai:uni-augsburg.opus-bayern.de:106695 |
| locations[5].is_oa | True |
| locations[5].source.id | https://openalex.org/S4306400930 |
| locations[5].source.issn | |
| locations[5].source.type | repository |
| locations[5].source.is_oa | False |
| locations[5].source.issn_l | |
| locations[5].source.is_core | False |
| locations[5].source.is_in_doaj | False |
| locations[5].source.display_name | OPUS (Augsburg University) |
| locations[5].source.host_organization | https://openalex.org/I119916105 |
| locations[5].source.host_organization_name | Augsburg University |
| locations[5].source.host_organization_lineage | https://openalex.org/I119916105 |
| locations[5].license | cc-by |
| locations[5].pdf_url | |
| locations[5].version | submittedVersion |
| locations[5].raw_type | doc-type:article |
| locations[5].license_id | https://openalex.org/licenses/cc-by |
| locations[5].is_accepted | False |
| locations[5].is_published | False |
| locations[5].raw_source_name | |
| locations[5].landing_page_url | https://opus.bibliothek.uni-augsburg.de/opus4/frontdoor/index/index/docId/106695 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5041087984 |
| authorships[0].author.orcid | https://orcid.org/0000-0001-9105-9814 |
| authorships[0].author.display_name | Jan P. Meier‐Kolthoff |
| authorships[0].countries | DE |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I7935750 |
| authorships[0].affiliations[0].raw_affiliation_string | Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Braunschweig, Germany |
| authorships[0].institutions[0].id | https://openalex.org/I7935750 |
| authorships[0].institutions[0].ror | https://ror.org/02tyer376 |
| authorships[0].institutions[0].type | facility |
| authorships[0].institutions[0].lineage | https://openalex.org/I315704651, https://openalex.org/I7935750 |
| authorships[0].institutions[0].country_code | DE |
| authorships[0].institutions[0].display_name | Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Jan P. Meier-Kolthoff |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Braunschweig, Germany |
| authorships[1].author.id | https://openalex.org/A5056895519 |
| authorships[1].author.orcid | https://orcid.org/0000-0002-5144-6200 |
| authorships[1].author.display_name | Markus Göker |
| authorships[1].countries | DE |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I7935750 |
| authorships[1].affiliations[0].raw_affiliation_string | Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Braunschweig, Germany |
| authorships[1].institutions[0].id | https://openalex.org/I7935750 |
| authorships[1].institutions[0].ror | https://ror.org/02tyer376 |
| authorships[1].institutions[0].type | facility |
| authorships[1].institutions[0].lineage | https://openalex.org/I315704651, https://openalex.org/I7935750 |
| authorships[1].institutions[0].country_code | DE |
| authorships[1].institutions[0].display_name | Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures |
| authorships[1].author_position | last |
| authorships[1].raw_author_name | Markus Göker |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Braunschweig, Germany |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://www.nature.com/articles/s41467-019-10210-3.pdf |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10015 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9998999834060669 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | Genomics and Phylogenetic Studies |
| related_works | https://openalex.org/W3046995430, https://openalex.org/W4289530336, https://openalex.org/W2360563843, https://openalex.org/W108626505, https://openalex.org/W3083676117, https://openalex.org/W1996287633, https://openalex.org/W1916235934, https://openalex.org/W2054155729, https://openalex.org/W2071178303, https://openalex.org/W2090384119 |
| cited_by_count | 2784 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 582 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 615 |
| counts_by_year[2].year | 2023 |
| counts_by_year[2].cited_by_count | 547 |
| counts_by_year[3].year | 2022 |
| counts_by_year[3].cited_by_count | 435 |
| counts_by_year[4].year | 2021 |
| counts_by_year[4].cited_by_count | 345 |
| counts_by_year[5].year | 2020 |
| counts_by_year[5].cited_by_count | 199 |
| counts_by_year[6].year | 2019 |
| counts_by_year[6].cited_by_count | 53 |
| counts_by_year[7].year | 2018 |
| counts_by_year[7].cited_by_count | 1 |
| locations_count | 6 |
| best_oa_location.id | doi:10.1038/s41467-019-10210-3 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S64187185 |
| best_oa_location.source.issn | 2041-1723 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 2041-1723 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | Nature Communications |
| best_oa_location.source.host_organization | https://openalex.org/P4310319908 |
| best_oa_location.source.host_organization_name | Nature Portfolio |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310319908, https://openalex.org/P4310319965 |
| best_oa_location.source.host_organization_lineage_names | Nature Portfolio, Springer Nature |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://www.nature.com/articles/s41467-019-10210-3.pdf |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | Nature Communications |
| best_oa_location.landing_page_url | https://doi.org/10.1038/s41467-019-10210-3 |
| primary_location.id | doi:10.1038/s41467-019-10210-3 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S64187185 |
| primary_location.source.issn | 2041-1723 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 2041-1723 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | Nature Communications |
| primary_location.source.host_organization | https://openalex.org/P4310319908 |
| primary_location.source.host_organization_name | Nature Portfolio |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310319908, https://openalex.org/P4310319965 |
| primary_location.source.host_organization_lineage_names | Nature Portfolio, Springer Nature |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://www.nature.com/articles/s41467-019-10210-3.pdf |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | Nature Communications |
| primary_location.landing_page_url | https://doi.org/10.1038/s41467-019-10210-3 |
| publication_date | 2019-05-16 |
| publication_year | 2019 |
| referenced_works | https://openalex.org/W2068687524, https://openalex.org/W1993578227, https://openalex.org/W2118001436, https://openalex.org/W2102274379, https://openalex.org/W2567454503, https://openalex.org/W1995510650, https://openalex.org/W2116206245, https://openalex.org/W2137237803, https://openalex.org/W2073925485, https://openalex.org/W2138988050, https://openalex.org/W2149017136, https://openalex.org/W2146536773, https://openalex.org/W1481642391, https://openalex.org/W2109532955, https://openalex.org/W2623492145, https://openalex.org/W2526966274, https://openalex.org/W2413098056, https://openalex.org/W2278535118, https://openalex.org/W2410898824, https://openalex.org/W2776582216, https://openalex.org/W2121811815, https://openalex.org/W2512706593, https://openalex.org/W2575178921, https://openalex.org/W2888547803, https://openalex.org/W2291091413, https://openalex.org/W2598819529, https://openalex.org/W2888099681, https://openalex.org/W2082960534, https://openalex.org/W2761171078, https://openalex.org/W2175094144, https://openalex.org/W2152375430, https://openalex.org/W1920471162, https://openalex.org/W2101997581, https://openalex.org/W2788327314, https://openalex.org/W4211088350, https://openalex.org/W2774638123, https://openalex.org/W1971646757, https://openalex.org/W4251254864, https://openalex.org/W2153726651, https://openalex.org/W2181534733, https://openalex.org/W2303992120, https://openalex.org/W1981820376, https://openalex.org/W1974064502, https://openalex.org/W2179988958, https://openalex.org/W2086606848, https://openalex.org/W2152093511, https://openalex.org/W2611058615, https://openalex.org/W2766358903, https://openalex.org/W2143420371, https://openalex.org/W2144144813, https://openalex.org/W2096404721, https://openalex.org/W2029423003, https://openalex.org/W2161973008, https://openalex.org/W2152580193, https://openalex.org/W2078969200, https://openalex.org/W1973132881, https://openalex.org/W2128777911, https://openalex.org/W2119888547, https://openalex.org/W1661708608, https://openalex.org/W2079222081, https://openalex.org/W2466365447, https://openalex.org/W2781763834, https://openalex.org/W2045843097, https://openalex.org/W2142678478, https://openalex.org/W2949239325, https://openalex.org/W2766527679, https://openalex.org/W2537307944, https://openalex.org/W2418929803, https://openalex.org/W2151178274, https://openalex.org/W2579533542, https://openalex.org/W2950044547, https://openalex.org/W2792362584, https://openalex.org/W4285719527 |
| referenced_works_count | 73 |
| abstract_inverted_index.. | 111 |
| abstract_inverted_index.a | 29, 40, 101 |
| abstract_inverted_index.It | 51 |
| abstract_inverted_index.an | 114 |
| abstract_inverted_index.as | 98 |
| abstract_inverted_index.be | 14 |
| abstract_inverted_index.by | 6 |
| abstract_inverted_index.is | 3, 113, 131 |
| abstract_inverted_index.of | 45, 104, 108, 120, 139, 143 |
| abstract_inverted_index.or | 147 |
| abstract_inverted_index.to | 39, 77, 127 |
| abstract_inverted_index.we | 21 |
| abstract_inverted_index.Yet | 10 |
| abstract_inverted_index.and | 16, 48, 55, 60, 65, 80, 130 |
| abstract_inverted_index.can | 13, 90 |
| abstract_inverted_index.for | 34, 58, 100, 117, 134 |
| abstract_inverted_index.how | 88 |
| abstract_inverted_index.new | 92, 144 |
| abstract_inverted_index.the | 24, 118, 135 |
| abstract_inverted_index.web | 32 |
| abstract_inverted_index.Here | 20 |
| abstract_inverted_index.TYGS | 72, 89, 112 |
| abstract_inverted_index.Type | 25 |
| abstract_inverted_index.also | 73 |
| abstract_inverted_index.from | 63 |
| abstract_inverted_index.into | 94 |
| abstract_inverted_index.such | 11, 97 |
| abstract_inverted_index.that | 122 |
| abstract_inverted_index.type | 69 |
| abstract_inverted_index.TYGS, | 23 |
| abstract_inverted_index.field | 138 |
| abstract_inverted_index.novel | 124 |
| abstract_inverted_index.yield | 91 |
| abstract_inverted_index.Genome | 27 |
| abstract_inverted_index.access | 76 |
| abstract_inverted_index.expert | 18 |
| abstract_inverted_index.genome | 70 |
| abstract_inverted_index.infers | 52 |
| abstract_inverted_index.large, | 41 |
| abstract_inverted_index.server | 33 |
| abstract_inverted_index.Server, | 28 |
| abstract_inverted_index.closest | 68 |
| abstract_inverted_index.complex | 15 |
| abstract_inverted_index.genera, | 145 |
| abstract_inverted_index.growing | 43 |
| abstract_inverted_index.helpful | 133 |
| abstract_inverted_index.rapidly | 136 |
| abstract_inverted_index.require | 17 |
| abstract_inverted_index.species | 59, 146 |
| abstract_inverted_index.unlocks | 123 |
| abstract_inverted_index.(Strain) | 26 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.analyses | 12 |
| abstract_inverted_index.approach | 116 |
| abstract_inverted_index.database | 44 |
| abstract_inverted_index.enterica | 110 |
| abstract_inverted_index.evidence | 99 |
| abstract_inverted_index.examples | 86 |
| abstract_inverted_index.genomic, | 46 |
| abstract_inverted_index.insights | 93 |
| abstract_inverted_index.methods. | 9 |
| abstract_inverted_index.microbes | 121 |
| abstract_inverted_index.proposed | 106 |
| abstract_inverted_index.provides | 74 |
| abstract_inverted_index.synonymy | 79 |
| abstract_inverted_index.taxonomy | 2 |
| abstract_inverted_index.Microbial | 1 |
| abstract_inverted_index.connected | 38 |
| abstract_inverted_index.estimates | 57 |
| abstract_inverted_index.expanding | 137 |
| abstract_inverted_index.important | 85 |
| abstract_inverted_index.introduce | 22 |
| abstract_inverted_index.microbial | 95 |
| abstract_inverted_index.taxonomic | 47, 82, 141 |
| abstract_inverted_index.taxonomy, | 37 |
| abstract_inverted_index.worldwide | 129 |
| abstract_inverted_index.Clinically | 84 |
| abstract_inverted_index.Salmonella | 109 |
| abstract_inverted_index.approaches | 126 |
| abstract_inverted_index.associated | 81 |
| abstract_inverted_index.boundaries | 62 |
| abstract_inverted_index.determined | 67 |
| abstract_inverted_index.influenced | 5 |
| abstract_inverted_index.integrated | 115 |
| abstract_inverted_index.knowledge. | 19 |
| abstract_inverted_index.previously | 105 |
| abstract_inverted_index.prokaryote | 36 |
| abstract_inverted_index.scientific | 125 |
| abstract_inverted_index.separation | 103 |
| abstract_inverted_index.sequences. | 71 |
| abstract_inverted_index.subspecies | 61, 107 |
| abstract_inverted_index.demonstrate | 87 |
| abstract_inverted_index.literature. | 83 |
| abstract_inverted_index.phylogenies | 54 |
| abstract_inverted_index.subspecies. | 148 |
| abstract_inverted_index.continuously | 42 |
| abstract_inverted_index.descriptions | 142 |
| abstract_inverted_index.genome-based | 7, 35, 140 |
| abstract_inverted_index.genome-scale | 53 |
| abstract_inverted_index.increasingly | 4 |
| abstract_inverted_index.information. | 50 |
| abstract_inverted_index.particularly | 132 |
| abstract_inverted_index.user-defined | 64 |
| abstract_inverted_index.automatically | 66 |
| abstract_inverted_index.comprehensive | 75 |
| abstract_inverted_index.computational | 8 |
| abstract_inverted_index.nomenclatural | 49 |
| abstract_inverted_index.nomenclature, | 78 |
| abstract_inverted_index.species-level | 102 |
| abstract_inverted_index.user-friendly | 30 |
| abstract_inverted_index.classification | 119 |
| abstract_inverted_index.classification, | 96 |
| abstract_inverted_index.high-throughput | 31 |
| abstract_inverted_index.microbiologists | 128 |
| abstract_inverted_index.state-of-the-art | 56 |
| cited_by_percentile_year.max | 100 |
| cited_by_percentile_year.min | 90 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 2 |
| citation_normalized_percentile.value | 0.99979544 |
| citation_normalized_percentile.is_in_top_1_percent | True |
| citation_normalized_percentile.is_in_top_10_percent | True |