Unveiling the microbiome of hydroponically cultivated lettuce: impact of Phytophthora cryptogea infection on plant-associated microorganisms Article Swipe
Liese Vlasselaer
,
Sam Crauwels
,
Bart Lievens
,
Barbara De Coninck
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/femsec/fiae010
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/femsec/fiae010
Understanding the complex interactions between plants and their associated microorganisms is crucial for optimizing plant health and productivity. While microbiomes of soil-bound cultivated crops are extensively studied, microbiomes of hydroponically cultivated crops have received limited attention. To address this knowledge gap, we investigated the rhizosphere and root endosphere of hydroponically cultivated lettuce. Additionally, we sought to explore the potential impact of the oomycete pathogen Phytophthora cryptogea on these microbiomes. Root samples were collected from symptomatic and nonsymptomatic plants in three different greenhouses. Amplicon sequencing of the bacterial 16S rRNA gene revealed significant alterations in the bacterial community upon P. cryptogea infection, particularly in the rhizosphere. Permutational multivariate analysis of variance (perMANOVA) revealed significant differences in microbial communities between plants from the three greenhouses, and between symptomatic and nonsymptomatic plants. Further analysis uncovered differentially abundant zero-radius operational taxonomic units (zOTUs) between symptomatic and nonsymptomatic plants. Interestingly, members of Pseudomonas and Flavobacterium were positively associated with symptomatic plants. Overall, this study provides valuable insights into the microbiome of hydroponically cultivated plants and highlights the influence of pathogen invasion on plant-associated microbial communities. Further research is required to elucidate the potential role of Pseudomonas and Flavobacterium spp. in controlling P. cryptogea infections within hydroponically cultivated lettuce greenhouses.
Related Topics
Concepts
Rhizosphere
Biology
Microbiome
Botany
Oomycete
Phyllosphere
Pseudomonas chlororaphis
Pathosystem
Pseudomonas
Pathogen
Bacteria
Microbiology
Bioinformatics
Genetics
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/femsec/fiae010
- https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdf
- OA Status
- gold
- Cited By
- 13
- References
- 94
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4391576442
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4391576442Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/femsec/fiae010Digital Object Identifier
- Title
-
Unveiling the microbiome of hydroponically cultivated lettuce: impact of Phytophthora cryptogea infection on plant-associated microorganismsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-02-05Full publication date if available
- Authors
-
Liese Vlasselaer, Sam Crauwels, Bart Lievens, Barbara De ConinckList of authors in order
- Landing page
-
https://doi.org/10.1093/femsec/fiae010Publisher landing page
- PDF URL
-
https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdfDirect OA link when available
- Concepts
-
Rhizosphere, Biology, Microbiome, Botany, Oomycete, Phyllosphere, Pseudomonas chlororaphis, Pathosystem, Pseudomonas, Pathogen, Bacteria, Microbiology, Bioinformatics, GeneticsTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
13Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 9, 2024: 4Per-year citation counts (last 5 years)
- References (count)
-
94Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4391576442 |
|---|---|
| doi | https://doi.org/10.1093/femsec/fiae010 |
| ids.doi | https://doi.org/10.1093/femsec/fiae010 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/38317643 |
| ids.openalex | https://openalex.org/W4391576442 |
| fwci | 10.166638 |
| mesh[0].qualifier_ui | |
| mesh[0].descriptor_ui | D018545 |
| mesh[0].is_major_topic | False |
| mesh[0].qualifier_name | |
| mesh[0].descriptor_name | Lactuca |
| mesh[1].qualifier_ui | Q000235 |
| mesh[1].descriptor_ui | D010838 |
| mesh[1].is_major_topic | True |
| mesh[1].qualifier_name | genetics |
| mesh[1].descriptor_name | Phytophthora |
| mesh[2].qualifier_ui | Q000235 |
| mesh[2].descriptor_ui | D012336 |
| mesh[2].is_major_topic | False |
| mesh[2].qualifier_name | genetics |
| mesh[2].descriptor_name | RNA, Ribosomal, 16S |
| mesh[3].qualifier_ui | Q000382 |
| mesh[3].descriptor_ui | D018517 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | microbiology |
| mesh[3].descriptor_name | Plant Roots |
| mesh[4].qualifier_ui | Q000235 |
| mesh[4].descriptor_ui | D064307 |
| mesh[4].is_major_topic | True |
| mesh[4].qualifier_name | genetics |
| mesh[4].descriptor_name | Microbiota |
| mesh[5].qualifier_ui | |
| mesh[5].descriptor_ui | D058441 |
| mesh[5].is_major_topic | False |
| mesh[5].qualifier_name | |
| mesh[5].descriptor_name | Rhizosphere |
| mesh[6].qualifier_ui | Q000235 |
| mesh[6].descriptor_ui | D005417 |
| mesh[6].is_major_topic | False |
| mesh[6].qualifier_name | genetics |
| mesh[6].descriptor_name | Flavobacterium |
| mesh[7].qualifier_ui | |
| mesh[7].descriptor_ui | D012988 |
| mesh[7].is_major_topic | False |
| mesh[7].qualifier_name | |
| mesh[7].descriptor_name | Soil Microbiology |
| mesh[8].qualifier_ui | |
| mesh[8].descriptor_ui | D018545 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | |
| mesh[8].descriptor_name | Lactuca |
| mesh[9].qualifier_ui | Q000235 |
| mesh[9].descriptor_ui | D010838 |
| mesh[9].is_major_topic | True |
| mesh[9].qualifier_name | genetics |
| mesh[9].descriptor_name | Phytophthora |
| mesh[10].qualifier_ui | Q000235 |
| mesh[10].descriptor_ui | D012336 |
| mesh[10].is_major_topic | False |
| mesh[10].qualifier_name | genetics |
| mesh[10].descriptor_name | RNA, Ribosomal, 16S |
| mesh[11].qualifier_ui | Q000382 |
| mesh[11].descriptor_ui | D018517 |
| mesh[11].is_major_topic | False |
| mesh[11].qualifier_name | microbiology |
| mesh[11].descriptor_name | Plant Roots |
| mesh[12].qualifier_ui | Q000235 |
| mesh[12].descriptor_ui | D064307 |
| mesh[12].is_major_topic | True |
| mesh[12].qualifier_name | genetics |
| mesh[12].descriptor_name | Microbiota |
| mesh[13].qualifier_ui | |
| mesh[13].descriptor_ui | D058441 |
| mesh[13].is_major_topic | False |
| mesh[13].qualifier_name | |
| mesh[13].descriptor_name | Rhizosphere |
| mesh[14].qualifier_ui | Q000235 |
| mesh[14].descriptor_ui | D005417 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | genetics |
| mesh[14].descriptor_name | Flavobacterium |
| mesh[15].qualifier_ui | |
| mesh[15].descriptor_ui | D012988 |
| mesh[15].is_major_topic | False |
| mesh[15].qualifier_name | |
| mesh[15].descriptor_name | Soil Microbiology |
| type | article |
| title | Unveiling the microbiome of hydroponically cultivated lettuce: impact of Phytophthora cryptogea infection on plant-associated microorganisms |
| awards[0].id | https://openalex.org/G8961587045 |
| awards[0].funder_id | https://openalex.org/F4320313460 |
| awards[0].display_name | |
| awards[0].funder_award_id | HBC.2020.3181 |
| awards[0].funder_display_name | Agentschap Innoveren en Ondernemen |
| biblio.issue | 3 |
| biblio.volume | 100 |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T10076 |
| topics[0].field.id | https://openalex.org/fields/11 |
| topics[0].field.display_name | Agricultural and Biological Sciences |
| topics[0].score | 0.9995999932289124 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1110 |
| topics[0].subfield.display_name | Plant Science |
| topics[0].display_name | Plant-Microbe Interactions and Immunity |
| topics[1].id | https://openalex.org/T11771 |
| topics[1].field.id | https://openalex.org/fields/11 |
| topics[1].field.display_name | Agricultural and Biological Sciences |
| topics[1].score | 0.9961000084877014 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1110 |
| topics[1].subfield.display_name | Plant Science |
| topics[1].display_name | Plant Pathogens and Resistance |
| topics[2].id | https://openalex.org/T10825 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9951000213623047 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1307 |
| topics[2].subfield.display_name | Cell Biology |
| topics[2].display_name | Plant Pathogens and Fungal Diseases |
| funders[0].id | https://openalex.org/F4320313460 |
| funders[0].ror | https://ror.org/032xdry56 |
| funders[0].display_name | Agentschap Innoveren en Ondernemen |
| is_xpac | False |
| apc_list.value | 2777 |
| apc_list.currency | GBP |
| apc_list.value_usd | 3406 |
| apc_paid.value | 2777 |
| apc_paid.currency | GBP |
| apc_paid.value_usd | 3406 |
| concepts[0].id | https://openalex.org/C86626682 |
| concepts[0].level | 3 |
| concepts[0].score | 0.9029687643051147 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q1124578 |
| concepts[0].display_name | Rhizosphere |
| concepts[1].id | https://openalex.org/C86803240 |
| concepts[1].level | 0 |
| concepts[1].score | 0.8791326284408569 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[1].display_name | Biology |
| concepts[2].id | https://openalex.org/C143121216 |
| concepts[2].level | 2 |
| concepts[2].score | 0.682266354560852 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q1330402 |
| concepts[2].display_name | Microbiome |
| concepts[3].id | https://openalex.org/C59822182 |
| concepts[3].level | 1 |
| concepts[3].score | 0.5844981670379639 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q441 |
| concepts[3].display_name | Botany |
| concepts[4].id | https://openalex.org/C2777537739 |
| concepts[4].level | 3 |
| concepts[4].score | 0.4978206157684326 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q223597 |
| concepts[4].display_name | Oomycete |
| concepts[5].id | https://openalex.org/C205626393 |
| concepts[5].level | 3 |
| concepts[5].score | 0.4944345951080322 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q2089263 |
| concepts[5].display_name | Phyllosphere |
| concepts[6].id | https://openalex.org/C2778774814 |
| concepts[6].level | 4 |
| concepts[6].score | 0.47328421473503113 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q7255026 |
| concepts[6].display_name | Pseudomonas chlororaphis |
| concepts[7].id | https://openalex.org/C23209589 |
| concepts[7].level | 3 |
| concepts[7].score | 0.4639641046524048 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q3368724 |
| concepts[7].display_name | Pathosystem |
| concepts[8].id | https://openalex.org/C2781463711 |
| concepts[8].level | 3 |
| concepts[8].score | 0.32777631282806396 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q131143 |
| concepts[8].display_name | Pseudomonas |
| concepts[9].id | https://openalex.org/C2776460866 |
| concepts[9].level | 2 |
| concepts[9].score | 0.28970932960510254 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q170065 |
| concepts[9].display_name | Pathogen |
| concepts[10].id | https://openalex.org/C523546767 |
| concepts[10].level | 2 |
| concepts[10].score | 0.1842505931854248 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q10876 |
| concepts[10].display_name | Bacteria |
| concepts[11].id | https://openalex.org/C89423630 |
| concepts[11].level | 1 |
| concepts[11].score | 0.16985681653022766 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q7193 |
| concepts[11].display_name | Microbiology |
| concepts[12].id | https://openalex.org/C60644358 |
| concepts[12].level | 1 |
| concepts[12].score | 0.0 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q128570 |
| concepts[12].display_name | Bioinformatics |
| concepts[13].id | https://openalex.org/C54355233 |
| concepts[13].level | 1 |
| concepts[13].score | 0.0 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[13].display_name | Genetics |
| keywords[0].id | https://openalex.org/keywords/rhizosphere |
| keywords[0].score | 0.9029687643051147 |
| keywords[0].display_name | Rhizosphere |
| keywords[1].id | https://openalex.org/keywords/biology |
| keywords[1].score | 0.8791326284408569 |
| keywords[1].display_name | Biology |
| keywords[2].id | https://openalex.org/keywords/microbiome |
| keywords[2].score | 0.682266354560852 |
| keywords[2].display_name | Microbiome |
| keywords[3].id | https://openalex.org/keywords/botany |
| keywords[3].score | 0.5844981670379639 |
| keywords[3].display_name | Botany |
| keywords[4].id | https://openalex.org/keywords/oomycete |
| keywords[4].score | 0.4978206157684326 |
| keywords[4].display_name | Oomycete |
| keywords[5].id | https://openalex.org/keywords/phyllosphere |
| keywords[5].score | 0.4944345951080322 |
| keywords[5].display_name | Phyllosphere |
| keywords[6].id | https://openalex.org/keywords/pseudomonas-chlororaphis |
| keywords[6].score | 0.47328421473503113 |
| keywords[6].display_name | Pseudomonas chlororaphis |
| keywords[7].id | https://openalex.org/keywords/pathosystem |
| keywords[7].score | 0.4639641046524048 |
| keywords[7].display_name | Pathosystem |
| keywords[8].id | https://openalex.org/keywords/pseudomonas |
| keywords[8].score | 0.32777631282806396 |
| keywords[8].display_name | Pseudomonas |
| keywords[9].id | https://openalex.org/keywords/pathogen |
| keywords[9].score | 0.28970932960510254 |
| keywords[9].display_name | Pathogen |
| keywords[10].id | https://openalex.org/keywords/bacteria |
| keywords[10].score | 0.1842505931854248 |
| keywords[10].display_name | Bacteria |
| keywords[11].id | https://openalex.org/keywords/microbiology |
| keywords[11].score | 0.16985681653022766 |
| keywords[11].display_name | Microbiology |
| language | en |
| locations[0].id | doi:10.1093/femsec/fiae010 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S171282171 |
| locations[0].source.issn | 0168-6496, 1574-6941 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 0168-6496 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | FEMS Microbiology Ecology |
| locations[0].source.host_organization | https://openalex.org/P4310311648 |
| locations[0].source.host_organization_name | Oxford University Press |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| locations[0].source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdf |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | FEMS Microbiology Ecology |
| locations[0].landing_page_url | https://doi.org/10.1093/femsec/fiae010 |
| locations[1].id | pmid:38317643 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | FEMS microbiology ecology |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/38317643 |
| locations[2].id | pmh:oai:lirias2repo.kuleuven.be:20.500.12942/738910 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S4306401954 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | Lirias (KU Leuven) |
| locations[2].source.host_organization | https://openalex.org/I99464096 |
| locations[2].source.host_organization_name | KU Leuven |
| locations[2].source.host_organization_lineage | https://openalex.org/I99464096 |
| locations[2].license | cc-by |
| locations[2].pdf_url | |
| locations[2].version | acceptedVersion |
| locations[2].raw_type | info:eu-repo/semantics/article |
| locations[2].license_id | https://openalex.org/licenses/cc-by |
| locations[2].is_accepted | True |
| locations[2].is_published | False |
| locations[2].raw_source_name | |
| locations[2].landing_page_url | https://lirias.kuleuven.be/handle/20.500.12942/738910 |
| locations[3].id | pmh:oai:pubmedcentral.nih.gov:10872686 |
| locations[3].is_oa | True |
| locations[3].source.id | https://openalex.org/S2764455111 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | PubMed Central |
| locations[3].source.host_organization | https://openalex.org/I1299303238 |
| locations[3].source.host_organization_name | National Institutes of Health |
| locations[3].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[3].license | cc-by |
| locations[3].pdf_url | https://pmc.ncbi.nlm.nih.gov/articles/PMC10872686/pdf/fiae010.pdf |
| locations[3].version | submittedVersion |
| locations[3].raw_type | Text |
| locations[3].license_id | https://openalex.org/licenses/cc-by |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | FEMS Microbiol Ecol |
| locations[3].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/10872686 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5030322546 |
| authorships[0].author.orcid | https://orcid.org/0000-0002-1770-7964 |
| authorships[0].author.display_name | Liese Vlasselaer |
| authorships[0].countries | BE |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I99464096 |
| authorships[0].affiliations[0].raw_affiliation_string | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium |
| authorships[0].affiliations[1].institution_ids | https://openalex.org/I99464096 |
| authorships[0].affiliations[1].raw_affiliation_string | Plant Health and Protection Laboratory, Division of Crop Biotechnics, Department of Biosystems, KU Leuven , Willem de Croylaan 42, B-3001 Leuven , Belgium |
| authorships[0].institutions[0].id | https://openalex.org/I99464096 |
| authorships[0].institutions[0].ror | https://ror.org/05f950310 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I99464096 |
| authorships[0].institutions[0].country_code | BE |
| authorships[0].institutions[0].display_name | KU Leuven |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Liese Vlasselaer |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium, Plant Health and Protection Laboratory, Division of Crop Biotechnics, Department of Biosystems, KU Leuven , Willem de Croylaan 42, B-3001 Leuven , Belgium |
| authorships[1].author.id | https://openalex.org/A5035754432 |
| authorships[1].author.orcid | https://orcid.org/0000-0001-7675-5301 |
| authorships[1].author.display_name | Sam Crauwels |
| authorships[1].countries | BE |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I99464096 |
| authorships[1].affiliations[0].raw_affiliation_string | Laboratory for Process Microbial Ecology and Bioinspirational Management, Center of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, KU Leuven , Willem de Croylaan 46, B-3001 Leuven , Belgium |
| authorships[1].affiliations[1].institution_ids | https://openalex.org/I99464096 |
| authorships[1].affiliations[1].raw_affiliation_string | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium |
| authorships[1].institutions[0].id | https://openalex.org/I99464096 |
| authorships[1].institutions[0].ror | https://ror.org/05f950310 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I99464096 |
| authorships[1].institutions[0].country_code | BE |
| authorships[1].institutions[0].display_name | KU Leuven |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Sam Crauwels |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium, Laboratory for Process Microbial Ecology and Bioinspirational Management, Center of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, KU Leuven , Willem de Croylaan 46, B-3001 Leuven , Belgium |
| authorships[2].author.id | https://openalex.org/A5020151600 |
| authorships[2].author.orcid | https://orcid.org/0000-0002-7698-6641 |
| authorships[2].author.display_name | Bart Lievens |
| authorships[2].countries | BE |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I99464096 |
| authorships[2].affiliations[0].raw_affiliation_string | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium |
| authorships[2].affiliations[1].institution_ids | https://openalex.org/I99464096 |
| authorships[2].affiliations[1].raw_affiliation_string | Laboratory for Process Microbial Ecology and Bioinspirational Management, Center of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, KU Leuven , Willem de Croylaan 46, B-3001 Leuven , Belgium |
| authorships[2].institutions[0].id | https://openalex.org/I99464096 |
| authorships[2].institutions[0].ror | https://ror.org/05f950310 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I99464096 |
| authorships[2].institutions[0].country_code | BE |
| authorships[2].institutions[0].display_name | KU Leuven |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Bart Lievens |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium, Laboratory for Process Microbial Ecology and Bioinspirational Management, Center of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, KU Leuven , Willem de Croylaan 46, B-3001 Leuven , Belgium |
| authorships[3].author.id | https://openalex.org/A5057444880 |
| authorships[3].author.orcid | https://orcid.org/0000-0002-9349-5086 |
| authorships[3].author.display_name | Barbara De Coninck |
| authorships[3].countries | BE |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I99464096 |
| authorships[3].affiliations[0].raw_affiliation_string | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium |
| authorships[3].affiliations[1].institution_ids | https://openalex.org/I99464096 |
| authorships[3].affiliations[1].raw_affiliation_string | Plant Health and Protection Laboratory, Division of Crop Biotechnics, Department of Biosystems, KU Leuven , Willem de Croylaan 42, B-3001 Leuven , Belgium |
| authorships[3].institutions[0].id | https://openalex.org/I99464096 |
| authorships[3].institutions[0].ror | https://ror.org/05f950310 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I99464096 |
| authorships[3].institutions[0].country_code | BE |
| authorships[3].institutions[0].display_name | KU Leuven |
| authorships[3].author_position | last |
| authorships[3].raw_author_name | Barbara De Coninck |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | KU Leuven Plant Institute , Kasteelpark Arenberg 31, B-3001 Leuven , Belgium, Plant Health and Protection Laboratory, Division of Crop Biotechnics, Department of Biosystems, KU Leuven , Willem de Croylaan 42, B-3001 Leuven , Belgium |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdf |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2024-02-07T00:00:00 |
| display_name | Unveiling the microbiome of hydroponically cultivated lettuce: impact of Phytophthora cryptogea infection on plant-associated microorganisms |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10076 |
| primary_topic.field.id | https://openalex.org/fields/11 |
| primary_topic.field.display_name | Agricultural and Biological Sciences |
| primary_topic.score | 0.9995999932289124 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1110 |
| primary_topic.subfield.display_name | Plant Science |
| primary_topic.display_name | Plant-Microbe Interactions and Immunity |
| related_works | https://openalex.org/W4393924791, https://openalex.org/W4220765104, https://openalex.org/W1524082180, https://openalex.org/W2883370299, https://openalex.org/W3016542132, https://openalex.org/W4394153917, https://openalex.org/W2034026585, https://openalex.org/W2168989804, https://openalex.org/W4293521342, https://openalex.org/W1940591454 |
| cited_by_count | 13 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 9 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 4 |
| locations_count | 4 |
| best_oa_location.id | doi:10.1093/femsec/fiae010 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S171282171 |
| best_oa_location.source.issn | 0168-6496, 1574-6941 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 0168-6496 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | FEMS Microbiology Ecology |
| best_oa_location.source.host_organization | https://openalex.org/P4310311648 |
| best_oa_location.source.host_organization_name | Oxford University Press |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| best_oa_location.source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdf |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | FEMS Microbiology Ecology |
| best_oa_location.landing_page_url | https://doi.org/10.1093/femsec/fiae010 |
| primary_location.id | doi:10.1093/femsec/fiae010 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S171282171 |
| primary_location.source.issn | 0168-6496, 1574-6941 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 0168-6496 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | FEMS Microbiology Ecology |
| primary_location.source.host_organization | https://openalex.org/P4310311648 |
| primary_location.source.host_organization_name | Oxford University Press |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| primary_location.source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://academic.oup.com/femsec/advance-article-pdf/doi/10.1093/femsec/fiae010/56588680/fiae010.pdf |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | FEMS Microbiology Ecology |
| primary_location.landing_page_url | https://doi.org/10.1093/femsec/fiae010 |
| publication_date | 2024-02-05 |
| publication_year | 2024 |
| referenced_works | https://openalex.org/W2025098195, https://openalex.org/W1929946102, https://openalex.org/W2075551762, https://openalex.org/W2063027274, https://openalex.org/W2110001740, https://openalex.org/W2114625709, https://openalex.org/W2025459454, https://openalex.org/W2789533954, https://openalex.org/W2017387862, https://openalex.org/W2129081161, https://openalex.org/W2102635703, https://openalex.org/W2895337931, https://openalex.org/W2984191523, https://openalex.org/W2599952482, https://openalex.org/W2592367925, https://openalex.org/W2080283023, https://openalex.org/W2982359249, https://openalex.org/W412982151, https://openalex.org/W2104763709, https://openalex.org/W2051474133, https://openalex.org/W6777256705, https://openalex.org/W3087208827, https://openalex.org/W2923759160, https://openalex.org/W2069698313, https://openalex.org/W2952463830, https://openalex.org/W3128214478, https://openalex.org/W2949920084, https://openalex.org/W2736210699, https://openalex.org/W2162667876, https://openalex.org/W6729038451, https://openalex.org/W2088833470, https://openalex.org/W2068904016, https://openalex.org/W2887278241, https://openalex.org/W3205642004, https://openalex.org/W4377940302, https://openalex.org/W2079184918, https://openalex.org/W2180533131, https://openalex.org/W2588997555, https://openalex.org/W2064058495, https://openalex.org/W2059083279, https://openalex.org/W2279625019, https://openalex.org/W4220948664, https://openalex.org/W3008238213, https://openalex.org/W2030389003, https://openalex.org/W2963252488, https://openalex.org/W2169457268, https://openalex.org/W2117457769, https://openalex.org/W2894930007, https://openalex.org/W4220762857, https://openalex.org/W2739220940, https://openalex.org/W2794093131, https://openalex.org/W2031550784, https://openalex.org/W4286699102, https://openalex.org/W2157640257, https://openalex.org/W6848086925, https://openalex.org/W2149993527, https://openalex.org/W2658234073, https://openalex.org/W2151062423, https://openalex.org/W2015365537, https://openalex.org/W3169516943, https://openalex.org/W2987324121, https://openalex.org/W4383872645, https://openalex.org/W2039662911, https://openalex.org/W6637999842, https://openalex.org/W2074237851, https://openalex.org/W2465246024, https://openalex.org/W1491316965, https://openalex.org/W4292454339, https://openalex.org/W2036227019, https://openalex.org/W2913327203, https://openalex.org/W4200405509, https://openalex.org/W2913888349, https://openalex.org/W3095147562, https://openalex.org/W6681455443, https://openalex.org/W2750459684, https://openalex.org/W4200095219, https://openalex.org/W2016176546, https://openalex.org/W2603394147, https://openalex.org/W2147507067, https://openalex.org/W2135285760, https://openalex.org/W6804271512, https://openalex.org/W2774644777, https://openalex.org/W4200088227, https://openalex.org/W2890851984, https://openalex.org/W2168953781, https://openalex.org/W2744286124, https://openalex.org/W3184645569, https://openalex.org/W3020901201, https://openalex.org/W2144317825, https://openalex.org/W4230375506, https://openalex.org/W4312621088, https://openalex.org/W1756361350, https://openalex.org/W2538509698, https://openalex.org/W3217198917 |
| referenced_works_count | 94 |
| abstract_inverted_index.P. | 99, 197 |
| abstract_inverted_index.To | 37 |
| abstract_inverted_index.in | 79, 94, 103, 115, 195 |
| abstract_inverted_index.is | 11, 183 |
| abstract_inverted_index.of | 21, 29, 49, 61, 85, 109, 147, 166, 174, 190 |
| abstract_inverted_index.on | 67, 177 |
| abstract_inverted_index.to | 56, 185 |
| abstract_inverted_index.we | 42, 54 |
| abstract_inverted_index.16S | 88 |
| abstract_inverted_index.and | 7, 17, 46, 76, 124, 127, 142, 149, 170, 192 |
| abstract_inverted_index.are | 25 |
| abstract_inverted_index.for | 13 |
| abstract_inverted_index.the | 2, 44, 58, 62, 86, 95, 104, 121, 164, 172, 187 |
| abstract_inverted_index.Root | 70 |
| abstract_inverted_index.from | 74, 120 |
| abstract_inverted_index.gap, | 41 |
| abstract_inverted_index.gene | 90 |
| abstract_inverted_index.have | 33 |
| abstract_inverted_index.into | 163 |
| abstract_inverted_index.rRNA | 89 |
| abstract_inverted_index.role | 189 |
| abstract_inverted_index.root | 47 |
| abstract_inverted_index.spp. | 194 |
| abstract_inverted_index.this | 39, 158 |
| abstract_inverted_index.upon | 98 |
| abstract_inverted_index.were | 72, 151 |
| abstract_inverted_index.with | 154 |
| abstract_inverted_index.While | 19 |
| abstract_inverted_index.crops | 24, 32 |
| abstract_inverted_index.plant | 15 |
| abstract_inverted_index.study | 159 |
| abstract_inverted_index.their | 8 |
| abstract_inverted_index.these | 68 |
| abstract_inverted_index.three | 80, 122 |
| abstract_inverted_index.units | 138 |
| abstract_inverted_index.health | 16 |
| abstract_inverted_index.impact | 60 |
| abstract_inverted_index.plants | 6, 78, 119, 169 |
| abstract_inverted_index.sought | 55 |
| abstract_inverted_index.within | 200 |
| abstract_inverted_index.(zOTUs) | 139 |
| abstract_inverted_index.Further | 130, 181 |
| abstract_inverted_index.address | 38 |
| abstract_inverted_index.between | 5, 118, 125, 140 |
| abstract_inverted_index.complex | 3 |
| abstract_inverted_index.crucial | 12 |
| abstract_inverted_index.explore | 57 |
| abstract_inverted_index.lettuce | 203 |
| abstract_inverted_index.limited | 35 |
| abstract_inverted_index.members | 146 |
| abstract_inverted_index.plants. | 129, 144, 156 |
| abstract_inverted_index.samples | 71 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.Amplicon | 83 |
| abstract_inverted_index.Overall, | 157 |
| abstract_inverted_index.abundant | 134 |
| abstract_inverted_index.analysis | 108, 131 |
| abstract_inverted_index.insights | 162 |
| abstract_inverted_index.invasion | 176 |
| abstract_inverted_index.lettuce. | 52 |
| abstract_inverted_index.oomycete | 63 |
| abstract_inverted_index.pathogen | 64, 175 |
| abstract_inverted_index.provides | 160 |
| abstract_inverted_index.received | 34 |
| abstract_inverted_index.required | 184 |
| abstract_inverted_index.research | 182 |
| abstract_inverted_index.revealed | 91, 112 |
| abstract_inverted_index.studied, | 27 |
| abstract_inverted_index.valuable | 161 |
| abstract_inverted_index.variance | 110 |
| abstract_inverted_index.bacterial | 87, 96 |
| abstract_inverted_index.collected | 73 |
| abstract_inverted_index.community | 97 |
| abstract_inverted_index.cryptogea | 66, 100, 198 |
| abstract_inverted_index.different | 81 |
| abstract_inverted_index.elucidate | 186 |
| abstract_inverted_index.influence | 173 |
| abstract_inverted_index.knowledge | 40 |
| abstract_inverted_index.microbial | 116, 179 |
| abstract_inverted_index.potential | 59, 188 |
| abstract_inverted_index.taxonomic | 137 |
| abstract_inverted_index.uncovered | 132 |
| abstract_inverted_index.associated | 9, 153 |
| abstract_inverted_index.attention. | 36 |
| abstract_inverted_index.cultivated | 23, 31, 51, 168, 202 |
| abstract_inverted_index.endosphere | 48 |
| abstract_inverted_index.highlights | 171 |
| abstract_inverted_index.infection, | 101 |
| abstract_inverted_index.infections | 199 |
| abstract_inverted_index.microbiome | 165 |
| abstract_inverted_index.optimizing | 14 |
| abstract_inverted_index.positively | 152 |
| abstract_inverted_index.sequencing | 84 |
| abstract_inverted_index.soil-bound | 22 |
| abstract_inverted_index.(perMANOVA) | 111 |
| abstract_inverted_index.Pseudomonas | 148, 191 |
| abstract_inverted_index.alterations | 93 |
| abstract_inverted_index.communities | 117 |
| abstract_inverted_index.controlling | 196 |
| abstract_inverted_index.differences | 114 |
| abstract_inverted_index.extensively | 26 |
| abstract_inverted_index.microbiomes | 20, 28 |
| abstract_inverted_index.operational | 136 |
| abstract_inverted_index.rhizosphere | 45 |
| abstract_inverted_index.significant | 92, 113 |
| abstract_inverted_index.symptomatic | 75, 126, 141, 155 |
| abstract_inverted_index.zero-radius | 135 |
| abstract_inverted_index.Phytophthora | 65 |
| abstract_inverted_index.communities. | 180 |
| abstract_inverted_index.greenhouses, | 123 |
| abstract_inverted_index.greenhouses. | 82, 204 |
| abstract_inverted_index.interactions | 4 |
| abstract_inverted_index.investigated | 43 |
| abstract_inverted_index.microbiomes. | 69 |
| abstract_inverted_index.multivariate | 107 |
| abstract_inverted_index.particularly | 102 |
| abstract_inverted_index.rhizosphere. | 105 |
| abstract_inverted_index.Additionally, | 53 |
| abstract_inverted_index.Permutational | 106 |
| abstract_inverted_index.Understanding | 1 |
| abstract_inverted_index.productivity. | 18 |
| abstract_inverted_index.Flavobacterium | 150, 193 |
| abstract_inverted_index.Interestingly, | 145 |
| abstract_inverted_index.differentially | 133 |
| abstract_inverted_index.hydroponically | 30, 50, 167, 201 |
| abstract_inverted_index.microorganisms | 10 |
| abstract_inverted_index.nonsymptomatic | 77, 128, 143 |
| abstract_inverted_index.plant-associated | 178 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 97 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 4 |
| citation_normalized_percentile.value | 0.98027849 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |