Variation in Accessory Genes Within the Klebsiella oxytoca Species Complex Delineates Monophyletic Members and Simplifies Coherent Genotyping Article Swipe
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.3389/fmicb.2021.692453
Members of the Klebsiella oxytoca species complex (KoSC) are emerging human pathogens causing infections of increasing significance especially in healthcare settings. KoSC strains are affiliated with distinct phylogroups based on genetic variation at the beta-lactamase gene ( bla OXY ) and it has been proposed that each major phylogroup represents a unique species. However, since the typing methods applied in clinical settings cannot differentiate every species within the complex, existing clinical, epidemiological and DNA sequence data is frequently misclassified. Here we systematically examined the phylogenetic relationship of KoSC strains to evaluate robustness of existing typing methods and to provide a simple typing strategy for KoSC members that cannot be differentiated biochemically. Initial analysis of a collection of K. oxytoca , K. michiganensis, K. pasteurii , and K. grimontii strains of environmental origin showed robust correlation of core phylogeny and blaOXY grouping. Moreover, we identified species-specific accessory gene loci for these strains. Extension of species correlation using database entries initially failed. However, assessment of average nucleotide identities (ANI) and phylogenetic validations showed that nearly one third of isolates in public databases have been misidentified. Reclassification resulted in a robust reference strain set for reliable species identification of new isolates or for retyping of strains previously analyzed by multi-locus sequence typing (MLST). Finally, we show convergence of ANI, core gene phylogeny, and accessory gene content for available KoSC genomes. We conclude that also the monophyletic members K. oxytoca , K. michiganensis , K. pasteurii and K. grimontii can be simply differentiated by a PCR strategy targeting bla OXY and accessory genes defined here.
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3389/fmicb.2021.692453
- OA Status
- gold
- Cited By
- 27
- References
- 36
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3186941396
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W3186941396Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3389/fmicb.2021.692453Digital Object Identifier
- Title
-
Variation in Accessory Genes Within the Klebsiella oxytoca Species Complex Delineates Monophyletic Members and Simplifies Coherent GenotypingWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2021Year of publication
- Publication date
-
2021-07-02Full publication date if available
- Authors
-
Amar Ćosić, Eva Leitner, Christian Petternel, Herbert Galler, Franz F. Reinthaler, Kathrin A. Herzog-Obereder, Elisabeth Tatscher, Sandra Raffl, Gebhard Feierl, Christoph Högenauer, Ellen L. Zechner, Sabine KienesbergerList of authors in order
- Landing page
-
https://doi.org/10.3389/fmicb.2021.692453Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.3389/fmicb.2021.692453Direct OA link when available
- Concepts
-
Biology, Klebsiella oxytoca, Phylogenetic tree, Multilocus sequence typing, Monophyly, Genetics, Phylogenetics, Typing, Genotyping, Genome, Gene, Evolutionary biology, Clade, Klebsiella pneumoniae, Genotype, Escherichia coliTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
27Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 7, 2024: 6, 2023: 8, 2022: 4, 2021: 2Per-year citation counts (last 5 years)
- References (count)
-
36Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W3186941396 |
|---|---|
| doi | https://doi.org/10.3389/fmicb.2021.692453 |
| ids.doi | https://doi.org/10.3389/fmicb.2021.692453 |
| ids.mag | 3186941396 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/34276625 |
| ids.openalex | https://openalex.org/W3186941396 |
| fwci | 1.75802117 |
| type | article |
| title | Variation in Accessory Genes Within the Klebsiella oxytoca Species Complex Delineates Monophyletic Members and Simplifies Coherent Genotyping |
| biblio.issue | |
| biblio.volume | 12 |
| biblio.last_page | 692453 |
| biblio.first_page | 692453 |
| topics[0].id | https://openalex.org/T10147 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9998000264167786 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1313 |
| topics[0].subfield.display_name | Molecular Medicine |
| topics[0].display_name | Antibiotic Resistance in Bacteria |
| topics[1].id | https://openalex.org/T10015 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.9994999766349792 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1312 |
| topics[1].subfield.display_name | Molecular Biology |
| topics[1].display_name | Genomics and Phylogenetic Studies |
| topics[2].id | https://openalex.org/T12167 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9983000159263611 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1308 |
| topics[2].subfield.display_name | Clinical Biochemistry |
| topics[2].display_name | Bacterial Identification and Susceptibility Testing |
| is_xpac | False |
| apc_list.value | 2950 |
| apc_list.currency | USD |
| apc_list.value_usd | 2950 |
| apc_paid.value | 2717 |
| apc_paid.currency | EUR |
| apc_paid.value_usd | 2930 |
| concepts[0].id | https://openalex.org/C86803240 |
| concepts[0].level | 0 |
| concepts[0].score | 0.848902702331543 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[0].display_name | Biology |
| concepts[1].id | https://openalex.org/C2778050735 |
| concepts[1].level | 5 |
| concepts[1].score | 0.7461773157119751 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q6420044 |
| concepts[1].display_name | Klebsiella oxytoca |
| concepts[2].id | https://openalex.org/C193252679 |
| concepts[2].level | 3 |
| concepts[2].score | 0.7156695127487183 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q242125 |
| concepts[2].display_name | Phylogenetic tree |
| concepts[3].id | https://openalex.org/C77434933 |
| concepts[3].level | 4 |
| concepts[3].score | 0.6655064821243286 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q4043440 |
| concepts[3].display_name | Multilocus sequence typing |
| concepts[4].id | https://openalex.org/C12326286 |
| concepts[4].level | 5 |
| concepts[4].score | 0.6277860403060913 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q210958 |
| concepts[4].display_name | Monophyly |
| concepts[5].id | https://openalex.org/C54355233 |
| concepts[5].level | 1 |
| concepts[5].score | 0.5904455184936523 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[5].display_name | Genetics |
| concepts[6].id | https://openalex.org/C90132467 |
| concepts[6].level | 3 |
| concepts[6].score | 0.5246493816375732 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q171184 |
| concepts[6].display_name | Phylogenetics |
| concepts[7].id | https://openalex.org/C2781209916 |
| concepts[7].level | 2 |
| concepts[7].score | 0.5220389366149902 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q3215756 |
| concepts[7].display_name | Typing |
| concepts[8].id | https://openalex.org/C31467283 |
| concepts[8].level | 4 |
| concepts[8].score | 0.5107841491699219 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q912147 |
| concepts[8].display_name | Genotyping |
| concepts[9].id | https://openalex.org/C141231307 |
| concepts[9].level | 3 |
| concepts[9].score | 0.4549134075641632 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q7020 |
| concepts[9].display_name | Genome |
| concepts[10].id | https://openalex.org/C104317684 |
| concepts[10].level | 2 |
| concepts[10].score | 0.42071184515953064 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[10].display_name | Gene |
| concepts[11].id | https://openalex.org/C78458016 |
| concepts[11].level | 1 |
| concepts[11].score | 0.4143190383911133 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q840400 |
| concepts[11].display_name | Evolutionary biology |
| concepts[12].id | https://openalex.org/C44465124 |
| concepts[12].level | 4 |
| concepts[12].score | 0.39600133895874023 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q713623 |
| concepts[12].display_name | Clade |
| concepts[13].id | https://openalex.org/C2777058267 |
| concepts[13].level | 4 |
| concepts[13].score | 0.2703125774860382 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q132592 |
| concepts[13].display_name | Klebsiella pneumoniae |
| concepts[14].id | https://openalex.org/C135763542 |
| concepts[14].level | 3 |
| concepts[14].score | 0.2569880485534668 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q106016 |
| concepts[14].display_name | Genotype |
| concepts[15].id | https://openalex.org/C547475151 |
| concepts[15].level | 3 |
| concepts[15].score | 0.0 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q25419 |
| concepts[15].display_name | Escherichia coli |
| keywords[0].id | https://openalex.org/keywords/biology |
| keywords[0].score | 0.848902702331543 |
| keywords[0].display_name | Biology |
| keywords[1].id | https://openalex.org/keywords/klebsiella-oxytoca |
| keywords[1].score | 0.7461773157119751 |
| keywords[1].display_name | Klebsiella oxytoca |
| keywords[2].id | https://openalex.org/keywords/phylogenetic-tree |
| keywords[2].score | 0.7156695127487183 |
| keywords[2].display_name | Phylogenetic tree |
| keywords[3].id | https://openalex.org/keywords/multilocus-sequence-typing |
| keywords[3].score | 0.6655064821243286 |
| keywords[3].display_name | Multilocus sequence typing |
| keywords[4].id | https://openalex.org/keywords/monophyly |
| keywords[4].score | 0.6277860403060913 |
| keywords[4].display_name | Monophyly |
| keywords[5].id | https://openalex.org/keywords/genetics |
| keywords[5].score | 0.5904455184936523 |
| keywords[5].display_name | Genetics |
| keywords[6].id | https://openalex.org/keywords/phylogenetics |
| keywords[6].score | 0.5246493816375732 |
| keywords[6].display_name | Phylogenetics |
| keywords[7].id | https://openalex.org/keywords/typing |
| keywords[7].score | 0.5220389366149902 |
| keywords[7].display_name | Typing |
| keywords[8].id | https://openalex.org/keywords/genotyping |
| keywords[8].score | 0.5107841491699219 |
| keywords[8].display_name | Genotyping |
| keywords[9].id | https://openalex.org/keywords/genome |
| keywords[9].score | 0.4549134075641632 |
| keywords[9].display_name | Genome |
| keywords[10].id | https://openalex.org/keywords/gene |
| keywords[10].score | 0.42071184515953064 |
| keywords[10].display_name | Gene |
| keywords[11].id | https://openalex.org/keywords/evolutionary-biology |
| keywords[11].score | 0.4143190383911133 |
| keywords[11].display_name | Evolutionary biology |
| keywords[12].id | https://openalex.org/keywords/clade |
| keywords[12].score | 0.39600133895874023 |
| keywords[12].display_name | Clade |
| keywords[13].id | https://openalex.org/keywords/klebsiella-pneumoniae |
| keywords[13].score | 0.2703125774860382 |
| keywords[13].display_name | Klebsiella pneumoniae |
| keywords[14].id | https://openalex.org/keywords/genotype |
| keywords[14].score | 0.2569880485534668 |
| keywords[14].display_name | Genotype |
| language | en |
| locations[0].id | doi:10.3389/fmicb.2021.692453 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S2484704948 |
| locations[0].source.issn | 1664-302X |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 1664-302X |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | Frontiers in Microbiology |
| locations[0].source.host_organization | https://openalex.org/P4310320527 |
| locations[0].source.host_organization_name | Frontiers Media |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310320527 |
| locations[0].license | cc-by |
| locations[0].pdf_url | |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | Frontiers in Microbiology |
| locations[0].landing_page_url | https://doi.org/10.3389/fmicb.2021.692453 |
| locations[1].id | pmid:34276625 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Frontiers in microbiology |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/34276625 |
| locations[2].id | pmh:oai:doaj.org/article:19cca2a5434442a2ac7d8e75ccd8c844 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S4306401280 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[2].source.host_organization | |
| locations[2].source.host_organization_name | |
| locations[2].source.host_organization_lineage | |
| locations[2].license | cc-by-sa |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | article |
| locations[2].license_id | https://openalex.org/licenses/cc-by-sa |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | Frontiers in Microbiology, Vol 12 (2021) |
| locations[2].landing_page_url | https://doaj.org/article/19cca2a5434442a2ac7d8e75ccd8c844 |
| locations[3].id | pmh:oai:pubmedcentral.nih.gov:8283571 |
| locations[3].is_oa | True |
| locations[3].source.id | https://openalex.org/S2764455111 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | PubMed Central |
| locations[3].source.host_organization | https://openalex.org/I1299303238 |
| locations[3].source.host_organization_name | National Institutes of Health |
| locations[3].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[3].license | other-oa |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | Text |
| locations[3].license_id | https://openalex.org/licenses/other-oa |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | Front Microbiol |
| locations[3].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/8283571 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5039795192 |
| authorships[0].author.orcid | |
| authorships[0].author.display_name | Amar Ćosić |
| authorships[0].countries | AT |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I4210117258 |
| authorships[0].affiliations[0].raw_affiliation_string | BioTechMed-Graz, Graz, Austria |
| authorships[0].affiliations[1].institution_ids | https://openalex.org/I15766117 |
| authorships[0].affiliations[1].raw_affiliation_string | Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[0].institutions[0].id | https://openalex.org/I4210117258 |
| authorships[0].institutions[0].ror | https://ror.org/02jfbm483 |
| authorships[0].institutions[0].type | facility |
| authorships[0].institutions[0].lineage | https://openalex.org/I4210117258 |
| authorships[0].institutions[0].country_code | AT |
| authorships[0].institutions[0].display_name | BioTechMed-Graz |
| authorships[0].institutions[1].id | https://openalex.org/I15766117 |
| authorships[0].institutions[1].ror | https://ror.org/01faaaf77 |
| authorships[0].institutions[1].type | education |
| authorships[0].institutions[1].lineage | https://openalex.org/I15766117 |
| authorships[0].institutions[1].country_code | AT |
| authorships[0].institutions[1].display_name | University of Graz |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Amar Cosic |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | BioTechMed-Graz, Graz, Austria, Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[1].author.id | https://openalex.org/A5039095165 |
| authorships[1].author.orcid | https://orcid.org/0000-0001-8748-2249 |
| authorships[1].author.display_name | Eva Leitner |
| authorships[1].countries | AT |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[1].affiliations[0].raw_affiliation_string | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[1].institutions[0].id | https://openalex.org/I202276237 |
| authorships[1].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[1].institutions[0].country_code | AT |
| authorships[1].institutions[0].display_name | Medical University of Graz |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Eva Leitner |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[2].author.id | https://openalex.org/A5040161418 |
| authorships[2].author.orcid | |
| authorships[2].author.display_name | Christian Petternel |
| authorships[2].countries | AT |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[2].affiliations[0].raw_affiliation_string | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[2].institutions[0].id | https://openalex.org/I202276237 |
| authorships[2].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[2].institutions[0].country_code | AT |
| authorships[2].institutions[0].display_name | Medical University of Graz |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Christian Petternel |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[3].author.id | https://openalex.org/A5062725191 |
| authorships[3].author.orcid | https://orcid.org/0000-0002-4577-6983 |
| authorships[3].author.display_name | Herbert Galler |
| authorships[3].countries | AT |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[3].affiliations[0].raw_affiliation_string | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[3].institutions[0].id | https://openalex.org/I202276237 |
| authorships[3].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[3].institutions[0].country_code | AT |
| authorships[3].institutions[0].display_name | Medical University of Graz |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Herbert Galler |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[4].author.id | https://openalex.org/A5001104367 |
| authorships[4].author.orcid | |
| authorships[4].author.display_name | Franz F. Reinthaler |
| authorships[4].countries | AT |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[4].affiliations[0].raw_affiliation_string | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[4].institutions[0].id | https://openalex.org/I202276237 |
| authorships[4].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[4].institutions[0].country_code | AT |
| authorships[4].institutions[0].display_name | Medical University of Graz |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Franz F. Reinthaler |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[5].author.id | https://openalex.org/A5046889207 |
| authorships[5].author.orcid | |
| authorships[5].author.display_name | Kathrin A. Herzog-Obereder |
| authorships[5].countries | AT |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[5].affiliations[0].raw_affiliation_string | Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Graz, Austria |
| authorships[5].institutions[0].id | https://openalex.org/I202276237 |
| authorships[5].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[5].institutions[0].country_code | AT |
| authorships[5].institutions[0].display_name | Medical University of Graz |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Kathrin A. Herzog-Obereder |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Graz, Austria |
| authorships[6].author.id | https://openalex.org/A5071533611 |
| authorships[6].author.orcid | |
| authorships[6].author.display_name | Elisabeth Tatscher |
| authorships[6].countries | AT |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[6].affiliations[0].raw_affiliation_string | Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Graz, Austria |
| authorships[6].institutions[0].id | https://openalex.org/I202276237 |
| authorships[6].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[6].institutions[0].country_code | AT |
| authorships[6].institutions[0].display_name | Medical University of Graz |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | Elisabeth Tatscher |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Graz, Austria |
| authorships[7].author.id | https://openalex.org/A5052505049 |
| authorships[7].author.orcid | |
| authorships[7].author.display_name | Sandra Raffl |
| authorships[7].countries | AT |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I15766117 |
| authorships[7].affiliations[0].raw_affiliation_string | Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[7].institutions[0].id | https://openalex.org/I15766117 |
| authorships[7].institutions[0].ror | https://ror.org/01faaaf77 |
| authorships[7].institutions[0].type | education |
| authorships[7].institutions[0].lineage | https://openalex.org/I15766117 |
| authorships[7].institutions[0].country_code | AT |
| authorships[7].institutions[0].display_name | University of Graz |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Sandra Raffl |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[8].author.id | https://openalex.org/A5111616801 |
| authorships[8].author.orcid | |
| authorships[8].author.display_name | Gebhard Feierl |
| authorships[8].countries | AT |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I202276237 |
| authorships[8].affiliations[0].raw_affiliation_string | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[8].institutions[0].id | https://openalex.org/I202276237 |
| authorships[8].institutions[0].ror | https://ror.org/02n0bts35 |
| authorships[8].institutions[0].type | education |
| authorships[8].institutions[0].lineage | https://openalex.org/I202276237 |
| authorships[8].institutions[0].country_code | AT |
| authorships[8].institutions[0].display_name | Medical University of Graz |
| authorships[8].author_position | middle |
| authorships[8].raw_author_name | Gebhard Feierl |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria |
| authorships[9].author.id | https://openalex.org/A5075835632 |
| authorships[9].author.orcid | https://orcid.org/0000-0003-4566-0806 |
| authorships[9].author.display_name | Christoph Högenauer |
| authorships[9].countries | AT |
| authorships[9].affiliations[0].institution_ids | https://openalex.org/I4210117258 |
| authorships[9].affiliations[0].raw_affiliation_string | BioTechMed-Graz, Graz, Austria |
| authorships[9].affiliations[1].institution_ids | https://openalex.org/I202276237 |
| authorships[9].affiliations[1].raw_affiliation_string | Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Graz, Austria |
| authorships[9].institutions[0].id | https://openalex.org/I4210117258 |
| authorships[9].institutions[0].ror | https://ror.org/02jfbm483 |
| authorships[9].institutions[0].type | facility |
| authorships[9].institutions[0].lineage | https://openalex.org/I4210117258 |
| authorships[9].institutions[0].country_code | AT |
| authorships[9].institutions[0].display_name | BioTechMed-Graz |
| authorships[9].institutions[1].id | https://openalex.org/I202276237 |
| authorships[9].institutions[1].ror | https://ror.org/02n0bts35 |
| authorships[9].institutions[1].type | education |
| authorships[9].institutions[1].lineage | https://openalex.org/I202276237 |
| authorships[9].institutions[1].country_code | AT |
| authorships[9].institutions[1].display_name | Medical University of Graz |
| authorships[9].author_position | middle |
| authorships[9].raw_author_name | Christoph Högenauer |
| authorships[9].is_corresponding | False |
| authorships[9].raw_affiliation_strings | BioTechMed-Graz, Graz, Austria, Division of Gastroenterology and Hepatology, Department of Internal Medicine, Medical University of Graz, Graz, Austria |
| authorships[10].author.id | https://openalex.org/A5066111566 |
| authorships[10].author.orcid | https://orcid.org/0000-0003-2035-1898 |
| authorships[10].author.display_name | Ellen L. Zechner |
| authorships[10].countries | AT |
| authorships[10].affiliations[0].institution_ids | https://openalex.org/I15766117 |
| authorships[10].affiliations[0].raw_affiliation_string | Field of Excellence BioHealth, University of Graz, Graz, Austria |
| authorships[10].affiliations[1].institution_ids | https://openalex.org/I15766117 |
| authorships[10].affiliations[1].raw_affiliation_string | Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[10].affiliations[2].institution_ids | https://openalex.org/I4210117258 |
| authorships[10].affiliations[2].raw_affiliation_string | BioTechMed-Graz, Graz, Austria |
| authorships[10].institutions[0].id | https://openalex.org/I4210117258 |
| authorships[10].institutions[0].ror | https://ror.org/02jfbm483 |
| authorships[10].institutions[0].type | facility |
| authorships[10].institutions[0].lineage | https://openalex.org/I4210117258 |
| authorships[10].institutions[0].country_code | AT |
| authorships[10].institutions[0].display_name | BioTechMed-Graz |
| authorships[10].institutions[1].id | https://openalex.org/I15766117 |
| authorships[10].institutions[1].ror | https://ror.org/01faaaf77 |
| authorships[10].institutions[1].type | education |
| authorships[10].institutions[1].lineage | https://openalex.org/I15766117 |
| authorships[10].institutions[1].country_code | AT |
| authorships[10].institutions[1].display_name | University of Graz |
| authorships[10].author_position | middle |
| authorships[10].raw_author_name | Ellen L. Zechner |
| authorships[10].is_corresponding | False |
| authorships[10].raw_affiliation_strings | BioTechMed-Graz, Graz, Austria, Field of Excellence BioHealth, University of Graz, Graz, Austria, Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[11].author.id | https://openalex.org/A5057179846 |
| authorships[11].author.orcid | https://orcid.org/0000-0003-3190-3678 |
| authorships[11].author.display_name | Sabine Kienesberger |
| authorships[11].countries | AT |
| authorships[11].affiliations[0].institution_ids | https://openalex.org/I15766117 |
| authorships[11].affiliations[0].raw_affiliation_string | Field of Excellence BioHealth, University of Graz, Graz, Austria |
| authorships[11].affiliations[1].institution_ids | https://openalex.org/I15766117 |
| authorships[11].affiliations[1].raw_affiliation_string | Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| authorships[11].affiliations[2].institution_ids | https://openalex.org/I4210117258 |
| authorships[11].affiliations[2].raw_affiliation_string | BioTechMed-Graz, Graz, Austria |
| authorships[11].institutions[0].id | https://openalex.org/I4210117258 |
| authorships[11].institutions[0].ror | https://ror.org/02jfbm483 |
| authorships[11].institutions[0].type | facility |
| authorships[11].institutions[0].lineage | https://openalex.org/I4210117258 |
| authorships[11].institutions[0].country_code | AT |
| authorships[11].institutions[0].display_name | BioTechMed-Graz |
| authorships[11].institutions[1].id | https://openalex.org/I15766117 |
| authorships[11].institutions[1].ror | https://ror.org/01faaaf77 |
| authorships[11].institutions[1].type | education |
| authorships[11].institutions[1].lineage | https://openalex.org/I15766117 |
| authorships[11].institutions[1].country_code | AT |
| authorships[11].institutions[1].display_name | University of Graz |
| authorships[11].author_position | last |
| authorships[11].raw_author_name | Sabine Kienesberger |
| authorships[11].is_corresponding | True |
| authorships[11].raw_affiliation_strings | BioTechMed-Graz, Graz, Austria, Field of Excellence BioHealth, University of Graz, Graz, Austria, Institute of Molecular Biosciences, University of Graz, Graz, Austria |
| has_content.pdf | False |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://doi.org/10.3389/fmicb.2021.692453 |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Variation in Accessory Genes Within the Klebsiella oxytoca Species Complex Delineates Monophyletic Members and Simplifies Coherent Genotyping |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10147 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9998000264167786 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1313 |
| primary_topic.subfield.display_name | Molecular Medicine |
| primary_topic.display_name | Antibiotic Resistance in Bacteria |
| related_works | https://openalex.org/W2771955576, https://openalex.org/W2074109587, https://openalex.org/W1981456912, https://openalex.org/W2415431859, https://openalex.org/W2023410356, https://openalex.org/W4211050334, https://openalex.org/W1984563346, https://openalex.org/W2098940569, https://openalex.org/W3134202315, https://openalex.org/W1967917710 |
| cited_by_count | 27 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 7 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 6 |
| counts_by_year[2].year | 2023 |
| counts_by_year[2].cited_by_count | 8 |
| counts_by_year[3].year | 2022 |
| counts_by_year[3].cited_by_count | 4 |
| counts_by_year[4].year | 2021 |
| counts_by_year[4].cited_by_count | 2 |
| locations_count | 4 |
| best_oa_location.id | doi:10.3389/fmicb.2021.692453 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S2484704948 |
| best_oa_location.source.issn | 1664-302X |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 1664-302X |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | Frontiers in Microbiology |
| best_oa_location.source.host_organization | https://openalex.org/P4310320527 |
| best_oa_location.source.host_organization_name | Frontiers Media |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310320527 |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | Frontiers in Microbiology |
| best_oa_location.landing_page_url | https://doi.org/10.3389/fmicb.2021.692453 |
| primary_location.id | doi:10.3389/fmicb.2021.692453 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S2484704948 |
| primary_location.source.issn | 1664-302X |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 1664-302X |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | Frontiers in Microbiology |
| primary_location.source.host_organization | https://openalex.org/P4310320527 |
| primary_location.source.host_organization_name | Frontiers Media |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310320527 |
| primary_location.license | cc-by |
| primary_location.pdf_url | |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | Frontiers in Microbiology |
| primary_location.landing_page_url | https://doi.org/10.3389/fmicb.2021.692453 |
| publication_date | 2021-07-02 |
| publication_year | 2021 |
| referenced_works | https://openalex.org/W2066734242, https://openalex.org/W2903805772, https://openalex.org/W3006865703, https://openalex.org/W2340958225, https://openalex.org/W3027104492, https://openalex.org/W2883595200, https://openalex.org/W2143165503, https://openalex.org/W2761432259, https://openalex.org/W2151499101, https://openalex.org/W2105968386, https://openalex.org/W2903080831, https://openalex.org/W2100945899, https://openalex.org/W2127775521, https://openalex.org/W2130824694, https://openalex.org/W2162494851, https://openalex.org/W2180225742, https://openalex.org/W1981722384, https://openalex.org/W2799524357, https://openalex.org/W2107282968, https://openalex.org/W3038960277, https://openalex.org/W2155613296, https://openalex.org/W2981963033, https://openalex.org/W2502396752, https://openalex.org/W2587470583, https://openalex.org/W2998757248, https://openalex.org/W2775806022, https://openalex.org/W3035274279, https://openalex.org/W2178637309, https://openalex.org/W2889786997, https://openalex.org/W2057033582, https://openalex.org/W2116913446, https://openalex.org/W2424737035, https://openalex.org/W2914541580, https://openalex.org/W2518616127, https://openalex.org/W2582469210, https://openalex.org/W2956662048 |
| referenced_works_count | 36 |
| abstract_inverted_index.( | 36 |
| abstract_inverted_index.) | 39 |
| abstract_inverted_index., | 119, 124, 236, 239 |
| abstract_inverted_index.a | 50, 99, 114, 186, 250 |
| abstract_inverted_index.K. | 117, 120, 122, 126, 234, 237, 240, 243 |
| abstract_inverted_index.We | 227 |
| abstract_inverted_index.at | 32 |
| abstract_inverted_index.be | 108, 246 |
| abstract_inverted_index.by | 205, 249 |
| abstract_inverted_index.in | 18, 59, 177, 185 |
| abstract_inverted_index.is | 76 |
| abstract_inverted_index.it | 41 |
| abstract_inverted_index.of | 1, 14, 86, 92, 113, 116, 129, 135, 152, 162, 175, 195, 201, 214 |
| abstract_inverted_index.on | 29 |
| abstract_inverted_index.or | 198 |
| abstract_inverted_index.to | 89, 97 |
| abstract_inverted_index.we | 80, 142, 211 |
| abstract_inverted_index.DNA | 73 |
| abstract_inverted_index.OXY | 38, 255 |
| abstract_inverted_index.PCR | 251 |
| abstract_inverted_index.and | 40, 72, 96, 125, 138, 167, 219, 242, 256 |
| abstract_inverted_index.are | 8, 23 |
| abstract_inverted_index.bla | 37, 254 |
| abstract_inverted_index.can | 245 |
| abstract_inverted_index.for | 103, 148, 191, 199, 223 |
| abstract_inverted_index.has | 42 |
| abstract_inverted_index.new | 196 |
| abstract_inverted_index.one | 173 |
| abstract_inverted_index.set | 190 |
| abstract_inverted_index.the | 2, 33, 55, 67, 83, 231 |
| abstract_inverted_index.ANI, | 215 |
| abstract_inverted_index.Here | 79 |
| abstract_inverted_index.KoSC | 21, 87, 104, 225 |
| abstract_inverted_index.also | 230 |
| abstract_inverted_index.been | 43, 181 |
| abstract_inverted_index.core | 136, 216 |
| abstract_inverted_index.data | 75 |
| abstract_inverted_index.each | 46 |
| abstract_inverted_index.gene | 35, 146, 217, 221 |
| abstract_inverted_index.have | 180 |
| abstract_inverted_index.loci | 147 |
| abstract_inverted_index.show | 212 |
| abstract_inverted_index.that | 45, 106, 171, 229 |
| abstract_inverted_index.with | 25 |
| abstract_inverted_index.(ANI) | 166 |
| abstract_inverted_index.based | 28 |
| abstract_inverted_index.every | 64 |
| abstract_inverted_index.genes | 258 |
| abstract_inverted_index.here. | 260 |
| abstract_inverted_index.human | 10 |
| abstract_inverted_index.major | 47 |
| abstract_inverted_index.since | 54 |
| abstract_inverted_index.these | 149 |
| abstract_inverted_index.third | 174 |
| abstract_inverted_index.using | 155 |
| abstract_inverted_index.(KoSC) | 7 |
| abstract_inverted_index.blaOXY | 139 |
| abstract_inverted_index.cannot | 62, 107 |
| abstract_inverted_index.nearly | 172 |
| abstract_inverted_index.origin | 131 |
| abstract_inverted_index.public | 178 |
| abstract_inverted_index.robust | 133, 187 |
| abstract_inverted_index.showed | 132, 170 |
| abstract_inverted_index.simple | 100 |
| abstract_inverted_index.simply | 247 |
| abstract_inverted_index.strain | 189 |
| abstract_inverted_index.typing | 56, 94, 101, 208 |
| abstract_inverted_index.unique | 51 |
| abstract_inverted_index.within | 66 |
| abstract_inverted_index.(MLST). | 209 |
| abstract_inverted_index.Initial | 111 |
| abstract_inverted_index.Members | 0 |
| abstract_inverted_index.applied | 58 |
| abstract_inverted_index.average | 163 |
| abstract_inverted_index.causing | 12 |
| abstract_inverted_index.complex | 6 |
| abstract_inverted_index.content | 222 |
| abstract_inverted_index.defined | 259 |
| abstract_inverted_index.entries | 157 |
| abstract_inverted_index.failed. | 159 |
| abstract_inverted_index.genetic | 30 |
| abstract_inverted_index.members | 105, 233 |
| abstract_inverted_index.methods | 57, 95 |
| abstract_inverted_index.oxytoca | 4, 118, 235 |
| abstract_inverted_index.provide | 98 |
| abstract_inverted_index.species | 5, 65, 153, 193 |
| abstract_inverted_index.strains | 22, 88, 128, 202 |
| abstract_inverted_index.Finally, | 210 |
| abstract_inverted_index.However, | 53, 160 |
| abstract_inverted_index.analysis | 112 |
| abstract_inverted_index.analyzed | 204 |
| abstract_inverted_index.clinical | 60 |
| abstract_inverted_index.complex, | 68 |
| abstract_inverted_index.conclude | 228 |
| abstract_inverted_index.database | 156 |
| abstract_inverted_index.distinct | 26 |
| abstract_inverted_index.emerging | 9 |
| abstract_inverted_index.evaluate | 90 |
| abstract_inverted_index.examined | 82 |
| abstract_inverted_index.existing | 69, 93 |
| abstract_inverted_index.genomes. | 226 |
| abstract_inverted_index.isolates | 176, 197 |
| abstract_inverted_index.proposed | 44 |
| abstract_inverted_index.reliable | 192 |
| abstract_inverted_index.resulted | 184 |
| abstract_inverted_index.retyping | 200 |
| abstract_inverted_index.sequence | 74, 207 |
| abstract_inverted_index.settings | 61 |
| abstract_inverted_index.species. | 52 |
| abstract_inverted_index.strains. | 150 |
| abstract_inverted_index.strategy | 102, 252 |
| abstract_inverted_index.Extension | 151 |
| abstract_inverted_index.Moreover, | 141 |
| abstract_inverted_index.accessory | 145, 220, 257 |
| abstract_inverted_index.available | 224 |
| abstract_inverted_index.clinical, | 70 |
| abstract_inverted_index.databases | 179 |
| abstract_inverted_index.grimontii | 127, 244 |
| abstract_inverted_index.grouping. | 140 |
| abstract_inverted_index.initially | 158 |
| abstract_inverted_index.pasteurii | 123, 241 |
| abstract_inverted_index.pathogens | 11 |
| abstract_inverted_index.phylogeny | 137 |
| abstract_inverted_index.reference | 188 |
| abstract_inverted_index.settings. | 20 |
| abstract_inverted_index.targeting | 253 |
| abstract_inverted_index.variation | 31 |
| abstract_inverted_index.Klebsiella | 3 |
| abstract_inverted_index.affiliated | 24 |
| abstract_inverted_index.assessment | 161 |
| abstract_inverted_index.collection | 115 |
| abstract_inverted_index.especially | 17 |
| abstract_inverted_index.frequently | 77 |
| abstract_inverted_index.healthcare | 19 |
| abstract_inverted_index.identified | 143 |
| abstract_inverted_index.identities | 165 |
| abstract_inverted_index.increasing | 15 |
| abstract_inverted_index.infections | 13 |
| abstract_inverted_index.nucleotide | 164 |
| abstract_inverted_index.phylogeny, | 218 |
| abstract_inverted_index.phylogroup | 48 |
| abstract_inverted_index.previously | 203 |
| abstract_inverted_index.represents | 49 |
| abstract_inverted_index.robustness | 91 |
| abstract_inverted_index.convergence | 213 |
| abstract_inverted_index.correlation | 134, 154 |
| abstract_inverted_index.multi-locus | 206 |
| abstract_inverted_index.phylogroups | 27 |
| abstract_inverted_index.validations | 169 |
| abstract_inverted_index.monophyletic | 232 |
| abstract_inverted_index.phylogenetic | 84, 168 |
| abstract_inverted_index.relationship | 85 |
| abstract_inverted_index.significance | 16 |
| abstract_inverted_index.differentiate | 63 |
| abstract_inverted_index.environmental | 130 |
| abstract_inverted_index.michiganensis | 238 |
| abstract_inverted_index.beta-lactamase | 34 |
| abstract_inverted_index.biochemically. | 110 |
| abstract_inverted_index.differentiated | 109, 248 |
| abstract_inverted_index.identification | 194 |
| abstract_inverted_index.michiganensis, | 121 |
| abstract_inverted_index.misclassified. | 78 |
| abstract_inverted_index.misidentified. | 182 |
| abstract_inverted_index.systematically | 81 |
| abstract_inverted_index.epidemiological | 71 |
| abstract_inverted_index.Reclassification | 183 |
| abstract_inverted_index.species-specific | 144 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 93 |
| corresponding_author_ids | https://openalex.org/A5057179846 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 12 |
| corresponding_institution_ids | https://openalex.org/I15766117, https://openalex.org/I4210117258 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.6600000262260437 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.81736678 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |