Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics Article Swipe
Rob Knight
,
M. Omar Din
,
Rodolfo A. Salido
,
Gillian Wright
,
Caitriona Brennan
,
Madison Ambre
,
Lauren Hansen
,
Tara Boyer
,
Jennifer Cao
,
Renee Oles
,
Lucas Patel
,
Yuhan Weng
,
Daniel McDonald
,
Shrikant S. Bhute
,
Grace Solini
,
Smruthi Karthikeyan
,
Greg Humphrey
,
Peter DeHoff
,
Sarah E. Kralicek
,
Joshua I. Levy
,
Mark Zeller
,
Gail Hecht
,
Louise C. Laurent
,
G Yeo
,
Kristian G. Andersen
,
Andrew Bartko
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.21203/rs.3.rs-7492978/v1
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.21203/rs.3.rs-7492978/v1
Related Topics
Concepts
No concepts available.
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.21203/rs.3.rs-7492978/v1
- https://www.researchsquare.com/article/rs-7492978/latest.pdf
- OA Status
- gold
- References
- 65
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4414099525
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4414099525Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.21203/rs.3.rs-7492978/v1Digital Object Identifier
- Title
-
Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomicsWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2025Year of publication
- Publication date
-
2025-09-10Full publication date if available
- Authors
-
Rob Knight, M. Omar Din, Rodolfo A. Salido, Gillian Wright, Caitriona Brennan, Madison Ambre, Lauren Hansen, Tara Boyer, Jennifer Cao, Renee Oles, Lucas Patel, Yuhan Weng, Daniel McDonald, Shrikant S. Bhute, Grace Solini, Smruthi Karthikeyan, Greg Humphrey, Peter DeHoff, Sarah E. Kralicek, Joshua I. Levy, Mark Zeller, Gail Hecht, Louise C. Laurent, G Yeo, Kristian G. Andersen, Andrew BartkoList of authors in order
- Landing page
-
https://doi.org/10.21203/rs.3.rs-7492978/v1Publisher landing page
- PDF URL
-
https://www.researchsquare.com/article/rs-7492978/latest.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.researchsquare.com/article/rs-7492978/latest.pdfDirect OA link when available
- Cited by
-
0Total citation count in OpenAlex
- References (count)
-
65Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4414099525 |
|---|---|
| doi | https://doi.org/10.21203/rs.3.rs-7492978/v1 |
| ids.doi | https://doi.org/10.21203/rs.3.rs-7492978/v1 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/40964040 |
| ids.openalex | https://openalex.org/W4414099525 |
| fwci | 0.0 |
| type | preprint |
| title | Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics |
| biblio.issue | |
| biblio.volume | |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T10015 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9994000196456909 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | Genomics and Phylogenetic Studies |
| topics[1].id | https://openalex.org/T10066 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.9944999814033508 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1312 |
| topics[1].subfield.display_name | Molecular Biology |
| topics[1].display_name | Gut microbiota and health |
| topics[2].id | https://openalex.org/T11791 |
| topics[2].field.id | https://openalex.org/fields/23 |
| topics[2].field.display_name | Environmental Science |
| topics[2].score | 0.9897000193595886 |
| topics[2].domain.id | https://openalex.org/domains/3 |
| topics[2].domain.display_name | Physical Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/2303 |
| topics[2].subfield.display_name | Ecology |
| topics[2].display_name | Microbial Community Ecology and Physiology |
| is_xpac | False |
| apc_list | |
| apc_paid | |
| language | en |
| locations[0].id | doi:10.21203/rs.3.rs-7492978/v1 |
| locations[0].is_oa | True |
| locations[0].source | |
| locations[0].license | cc-by |
| locations[0].pdf_url | https://www.researchsquare.com/article/rs-7492978/latest.pdf |
| locations[0].version | acceptedVersion |
| locations[0].raw_type | posted-content |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | False |
| locations[0].raw_source_name | |
| locations[0].landing_page_url | https://doi.org/10.21203/rs.3.rs-7492978/v1 |
| locations[1].id | pmid:40964040 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Research square |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/40964040 |
| locations[2].id | pmh:oai:europepmc.org:11249854 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S4306400806 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | Europe PMC (PubMed Central) |
| locations[2].source.host_organization | https://openalex.org/I1303153112 |
| locations[2].source.host_organization_name | European Bioinformatics Institute |
| locations[2].source.host_organization_lineage | https://openalex.org/I1303153112 |
| locations[2].license | cc-by |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | Text |
| locations[2].license_id | https://openalex.org/licenses/cc-by |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | |
| locations[2].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/12440100 |
| indexed_in | crossref, pubmed |
| authorships[0].author.id | https://openalex.org/A5033881627 |
| authorships[0].author.orcid | https://orcid.org/0000-0002-0975-9019 |
| authorships[0].author.display_name | Rob Knight |
| authorships[0].affiliations[0].raw_affiliation_string | University of California San Diego:Dpt of Pediatrics;Dpt of Computer Science and Engineering;Shu Chien-Gene Lay Dpt of Bioengineering;Halicioglu Data Science Inst;Center for Microbiome Innovation |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Rob Knight |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | University of California San Diego:Dpt of Pediatrics;Dpt of Computer Science and Engineering;Shu Chien-Gene Lay Dpt of Bioengineering;Halicioglu Data Science Inst;Center for Microbiome Innovation |
| authorships[1].author.id | https://openalex.org/A5058703939 |
| authorships[1].author.orcid | https://orcid.org/0000-0003-4012-4182 |
| authorships[1].author.display_name | M. Omar Din |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | M. Omar Din |
| authorships[1].is_corresponding | False |
| authorships[2].author.id | https://openalex.org/A5022020022 |
| authorships[2].author.orcid | https://orcid.org/0000-0003-0631-2817 |
| authorships[2].author.display_name | Rodolfo A. Salido |
| authorships[2].countries | US |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[2].affiliations[0].raw_affiliation_string | University of California San Diego |
| authorships[2].institutions[0].id | https://openalex.org/I36258959 |
| authorships[2].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[2].institutions[0].country_code | US |
| authorships[2].institutions[0].display_name | University of California, San Diego |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Rodolfo Salido |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | University of California San Diego |
| authorships[3].author.id | https://openalex.org/A5100711029 |
| authorships[3].author.orcid | https://orcid.org/0000-0003-2183-711X |
| authorships[3].author.display_name | Gillian Wright |
| authorships[3].countries | US |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[3].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[3].institutions[0].id | https://openalex.org/I36258959 |
| authorships[3].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[3].institutions[0].country_code | US |
| authorships[3].institutions[0].display_name | University of California, San Diego |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Gillian Wright |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | University of California, San Diego |
| authorships[4].author.id | https://openalex.org/A5066195302 |
| authorships[4].author.orcid | https://orcid.org/0000-0003-3943-6701 |
| authorships[4].author.display_name | Caitriona Brennan |
| authorships[4].countries | US |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[4].affiliations[0].raw_affiliation_string | University of California San Diego |
| authorships[4].institutions[0].id | https://openalex.org/I36258959 |
| authorships[4].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[4].institutions[0].country_code | US |
| authorships[4].institutions[0].display_name | University of California, San Diego |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Caitriona Brennan |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | University of California San Diego |
| authorships[5].author.id | https://openalex.org/A5107290261 |
| authorships[5].author.orcid | |
| authorships[5].author.display_name | Madison Ambre |
| authorships[5].countries | US |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[5].affiliations[0].raw_affiliation_string | University of California San Diego |
| authorships[5].institutions[0].id | https://openalex.org/I36258959 |
| authorships[5].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[5].institutions[0].country_code | US |
| authorships[5].institutions[0].display_name | University of California, San Diego |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Madison Ambre |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | University of California San Diego |
| authorships[6].author.id | https://openalex.org/A5109798987 |
| authorships[6].author.orcid | |
| authorships[6].author.display_name | Lauren Hansen |
| authorships[6].countries | US |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[6].affiliations[0].raw_affiliation_string | University of California San Diego |
| authorships[6].institutions[0].id | https://openalex.org/I36258959 |
| authorships[6].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[6].institutions[0].country_code | US |
| authorships[6].institutions[0].display_name | University of California, San Diego |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | Lauren Hansen |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | University of California San Diego |
| authorships[7].author.id | https://openalex.org/A5111329325 |
| authorships[7].author.orcid | |
| authorships[7].author.display_name | Tara Boyer |
| authorships[7].countries | US |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[7].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[7].institutions[0].id | https://openalex.org/I36258959 |
| authorships[7].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[7].institutions[0].type | education |
| authorships[7].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[7].institutions[0].country_code | US |
| authorships[7].institutions[0].display_name | University of California, San Diego |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Tara Boyer |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | University of California, San Diego |
| authorships[8].author.id | https://openalex.org/A5101524998 |
| authorships[8].author.orcid | https://orcid.org/0000-0001-6129-9542 |
| authorships[8].author.display_name | Jennifer Cao |
| authorships[8].countries | US |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[8].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[8].institutions[0].id | https://openalex.org/I36258959 |
| authorships[8].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[8].institutions[0].type | education |
| authorships[8].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[8].institutions[0].country_code | US |
| authorships[8].institutions[0].display_name | University of California, San Diego |
| authorships[8].author_position | middle |
| authorships[8].raw_author_name | Jennifer Cao |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | University of California, San Diego |
| authorships[9].author.id | https://openalex.org/A5092516381 |
| authorships[9].author.orcid | https://orcid.org/0000-0001-5945-0215 |
| authorships[9].author.display_name | Renee Oles |
| authorships[9].countries | US |
| authorships[9].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[9].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[9].institutions[0].id | https://openalex.org/I36258959 |
| authorships[9].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[9].institutions[0].type | education |
| authorships[9].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[9].institutions[0].country_code | US |
| authorships[9].institutions[0].display_name | University of California, San Diego |
| authorships[9].author_position | middle |
| authorships[9].raw_author_name | Renee Oles |
| authorships[9].is_corresponding | False |
| authorships[9].raw_affiliation_strings | University of California, San Diego |
| authorships[10].author.id | https://openalex.org/A5042488207 |
| authorships[10].author.orcid | https://orcid.org/0000-0001-8607-2782 |
| authorships[10].author.display_name | Lucas Patel |
| authorships[10].countries | US |
| authorships[10].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[10].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[10].institutions[0].id | https://openalex.org/I36258959 |
| authorships[10].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[10].institutions[0].type | education |
| authorships[10].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[10].institutions[0].country_code | US |
| authorships[10].institutions[0].display_name | University of California, San Diego |
| authorships[10].author_position | middle |
| authorships[10].raw_author_name | Lucas Patel |
| authorships[10].is_corresponding | False |
| authorships[10].raw_affiliation_strings | University of California, San Diego |
| authorships[11].author.id | https://openalex.org/A5101370841 |
| authorships[11].author.orcid | https://orcid.org/0009-0005-3453-1402 |
| authorships[11].author.display_name | Yuhan Weng |
| authorships[11].countries | US |
| authorships[11].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[11].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[11].institutions[0].id | https://openalex.org/I36258959 |
| authorships[11].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[11].institutions[0].type | education |
| authorships[11].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[11].institutions[0].country_code | US |
| authorships[11].institutions[0].display_name | University of California, San Diego |
| authorships[11].author_position | middle |
| authorships[11].raw_author_name | Yuhan Weng |
| authorships[11].is_corresponding | False |
| authorships[11].raw_affiliation_strings | University of California, San Diego |
| authorships[12].author.id | https://openalex.org/A5022461817 |
| authorships[12].author.orcid | https://orcid.org/0000-0003-0876-9060 |
| authorships[12].author.display_name | Daniel McDonald |
| authorships[12].countries | US |
| authorships[12].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[12].affiliations[0].raw_affiliation_string | University of California San Diego |
| authorships[12].institutions[0].id | https://openalex.org/I36258959 |
| authorships[12].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[12].institutions[0].type | education |
| authorships[12].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[12].institutions[0].country_code | US |
| authorships[12].institutions[0].display_name | University of California, San Diego |
| authorships[12].author_position | middle |
| authorships[12].raw_author_name | Daniel McDonald |
| authorships[12].is_corresponding | False |
| authorships[12].raw_affiliation_strings | University of California San Diego |
| authorships[13].author.id | https://openalex.org/A5077152632 |
| authorships[13].author.orcid | https://orcid.org/0000-0003-1576-3548 |
| authorships[13].author.display_name | Shrikant S. Bhute |
| authorships[13].countries | US |
| authorships[13].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[13].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[13].institutions[0].id | https://openalex.org/I36258959 |
| authorships[13].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[13].institutions[0].type | education |
| authorships[13].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[13].institutions[0].country_code | US |
| authorships[13].institutions[0].display_name | University of California, San Diego |
| authorships[13].author_position | middle |
| authorships[13].raw_author_name | Shrikant Bhute |
| authorships[13].is_corresponding | False |
| authorships[13].raw_affiliation_strings | University of California, San Diego |
| authorships[14].author.id | https://openalex.org/A5035561469 |
| authorships[14].author.orcid | |
| authorships[14].author.display_name | Grace Solini |
| authorships[14].countries | US |
| authorships[14].affiliations[0].institution_ids | https://openalex.org/I122411786 |
| authorships[14].affiliations[0].raw_affiliation_string | California Institute of Technology |
| authorships[14].institutions[0].id | https://openalex.org/I122411786 |
| authorships[14].institutions[0].ror | https://ror.org/05dxps055 |
| authorships[14].institutions[0].type | education |
| authorships[14].institutions[0].lineage | https://openalex.org/I122411786 |
| authorships[14].institutions[0].country_code | US |
| authorships[14].institutions[0].display_name | California Institute of Technology |
| authorships[14].author_position | middle |
| authorships[14].raw_author_name | Grace Solini |
| authorships[14].is_corresponding | False |
| authorships[14].raw_affiliation_strings | California Institute of Technology |
| authorships[15].author.id | https://openalex.org/A5042979343 |
| authorships[15].author.orcid | https://orcid.org/0000-0001-6226-4536 |
| authorships[15].author.display_name | Smruthi Karthikeyan |
| authorships[15].countries | US |
| authorships[15].affiliations[0].institution_ids | https://openalex.org/I122411786 |
| authorships[15].affiliations[0].raw_affiliation_string | Caltech |
| authorships[15].institutions[0].id | https://openalex.org/I122411786 |
| authorships[15].institutions[0].ror | https://ror.org/05dxps055 |
| authorships[15].institutions[0].type | education |
| authorships[15].institutions[0].lineage | https://openalex.org/I122411786 |
| authorships[15].institutions[0].country_code | US |
| authorships[15].institutions[0].display_name | California Institute of Technology |
| authorships[15].author_position | middle |
| authorships[15].raw_author_name | Smruthi Karthikeyan |
| authorships[15].is_corresponding | False |
| authorships[15].raw_affiliation_strings | Caltech |
| authorships[16].author.id | https://openalex.org/A5075864720 |
| authorships[16].author.orcid | |
| authorships[16].author.display_name | Greg Humphrey |
| authorships[16].countries | US |
| authorships[16].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[16].affiliations[0].raw_affiliation_string | University of California at San Diego |
| authorships[16].institutions[0].id | https://openalex.org/I36258959 |
| authorships[16].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[16].institutions[0].type | education |
| authorships[16].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[16].institutions[0].country_code | US |
| authorships[16].institutions[0].display_name | University of California, San Diego |
| authorships[16].author_position | middle |
| authorships[16].raw_author_name | Greg Humphrey |
| authorships[16].is_corresponding | False |
| authorships[16].raw_affiliation_strings | University of California at San Diego |
| authorships[17].author.id | https://openalex.org/A5110606053 |
| authorships[17].author.orcid | |
| authorships[17].author.display_name | Peter DeHoff |
| authorships[17].countries | US |
| authorships[17].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[17].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[17].institutions[0].id | https://openalex.org/I36258959 |
| authorships[17].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[17].institutions[0].type | education |
| authorships[17].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[17].institutions[0].country_code | US |
| authorships[17].institutions[0].display_name | University of California, San Diego |
| authorships[17].author_position | middle |
| authorships[17].raw_author_name | Peter DeHoff |
| authorships[17].is_corresponding | False |
| authorships[17].raw_affiliation_strings | University of California, San Diego |
| authorships[18].author.id | https://openalex.org/A5057237922 |
| authorships[18].author.orcid | https://orcid.org/0000-0002-9950-9450 |
| authorships[18].author.display_name | Sarah E. Kralicek |
| authorships[18].affiliations[0].raw_affiliation_string | Midwestern University |
| authorships[18].author_position | middle |
| authorships[18].raw_author_name | Sarah Kralicek |
| authorships[18].is_corresponding | False |
| authorships[18].raw_affiliation_strings | Midwestern University |
| authorships[19].author.id | https://openalex.org/A5037784736 |
| authorships[19].author.orcid | https://orcid.org/0000-0001-7573-7793 |
| authorships[19].author.display_name | Joshua I. Levy |
| authorships[19].countries | US |
| authorships[19].affiliations[0].institution_ids | https://openalex.org/I123431417 |
| authorships[19].affiliations[0].raw_affiliation_string | The Scripps Research Institute |
| authorships[19].institutions[0].id | https://openalex.org/I123431417 |
| authorships[19].institutions[0].ror | https://ror.org/02dxx6824 |
| authorships[19].institutions[0].type | nonprofit |
| authorships[19].institutions[0].lineage | https://openalex.org/I123431417 |
| authorships[19].institutions[0].country_code | US |
| authorships[19].institutions[0].display_name | Scripps Research Institute |
| authorships[19].author_position | middle |
| authorships[19].raw_author_name | Joshua Levy |
| authorships[19].is_corresponding | False |
| authorships[19].raw_affiliation_strings | The Scripps Research Institute |
| authorships[20].author.id | https://openalex.org/A5071350112 |
| authorships[20].author.orcid | https://orcid.org/0009-0007-7920-8005 |
| authorships[20].author.display_name | Mark Zeller |
| authorships[20].countries | US |
| authorships[20].affiliations[0].institution_ids | https://openalex.org/I123431417 |
| authorships[20].affiliations[0].raw_affiliation_string | Department of Immunology and Microbiology, The Scripps Research Institute |
| authorships[20].institutions[0].id | https://openalex.org/I123431417 |
| authorships[20].institutions[0].ror | https://ror.org/02dxx6824 |
| authorships[20].institutions[0].type | nonprofit |
| authorships[20].institutions[0].lineage | https://openalex.org/I123431417 |
| authorships[20].institutions[0].country_code | US |
| authorships[20].institutions[0].display_name | Scripps Research Institute |
| authorships[20].author_position | middle |
| authorships[20].raw_author_name | Mark Zeller |
| authorships[20].is_corresponding | False |
| authorships[20].raw_affiliation_strings | Department of Immunology and Microbiology, The Scripps Research Institute |
| authorships[21].author.id | https://openalex.org/A5027111971 |
| authorships[21].author.orcid | https://orcid.org/0000-0002-6877-8463 |
| authorships[21].author.display_name | Gail Hecht |
| authorships[21].countries | US |
| authorships[21].affiliations[0].institution_ids | https://openalex.org/I1304196042 |
| authorships[21].affiliations[0].raw_affiliation_string | Loyola University Medical Center |
| authorships[21].institutions[0].id | https://openalex.org/I1304196042 |
| authorships[21].institutions[0].ror | https://ror.org/05xcyt367 |
| authorships[21].institutions[0].type | healthcare |
| authorships[21].institutions[0].lineage | https://openalex.org/I1304196042, https://openalex.org/I1304269903 |
| authorships[21].institutions[0].country_code | US |
| authorships[21].institutions[0].display_name | Loyola University Medical Center |
| authorships[21].author_position | middle |
| authorships[21].raw_author_name | Gail Hecht |
| authorships[21].is_corresponding | False |
| authorships[21].raw_affiliation_strings | Loyola University Medical Center |
| authorships[22].author.id | https://openalex.org/A5058320505 |
| authorships[22].author.orcid | https://orcid.org/0000-0002-2095-7534 |
| authorships[22].author.display_name | Louise C. Laurent |
| authorships[22].countries | US |
| authorships[22].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[22].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[22].institutions[0].id | https://openalex.org/I36258959 |
| authorships[22].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[22].institutions[0].type | education |
| authorships[22].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[22].institutions[0].country_code | US |
| authorships[22].institutions[0].display_name | University of California, San Diego |
| authorships[22].author_position | middle |
| authorships[22].raw_author_name | Louise Laurent |
| authorships[22].is_corresponding | False |
| authorships[22].raw_affiliation_strings | University of California, San Diego |
| authorships[23].author.id | https://openalex.org/A5082310752 |
| authorships[23].author.orcid | |
| authorships[23].author.display_name | G Yeo |
| authorships[23].countries | US |
| authorships[23].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[23].affiliations[0].raw_affiliation_string | University of California, San Diego |
| authorships[23].institutions[0].id | https://openalex.org/I36258959 |
| authorships[23].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[23].institutions[0].type | education |
| authorships[23].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[23].institutions[0].country_code | US |
| authorships[23].institutions[0].display_name | University of California, San Diego |
| authorships[23].author_position | middle |
| authorships[23].raw_author_name | Gene Yeo |
| authorships[23].is_corresponding | False |
| authorships[23].raw_affiliation_strings | University of California, San Diego |
| authorships[24].author.id | https://openalex.org/A5028103881 |
| authorships[24].author.orcid | https://orcid.org/0000-0001-6431-5982 |
| authorships[24].author.display_name | Kristian G. Andersen |
| authorships[24].countries | US |
| authorships[24].affiliations[0].institution_ids | https://openalex.org/I123431417 |
| authorships[24].affiliations[0].raw_affiliation_string | Department of Immunology and Microbiology The Scripps Research Institute La Jolla CA USA |
| authorships[24].institutions[0].id | https://openalex.org/I123431417 |
| authorships[24].institutions[0].ror | https://ror.org/02dxx6824 |
| authorships[24].institutions[0].type | nonprofit |
| authorships[24].institutions[0].lineage | https://openalex.org/I123431417 |
| authorships[24].institutions[0].country_code | US |
| authorships[24].institutions[0].display_name | Scripps Research Institute |
| authorships[24].author_position | middle |
| authorships[24].raw_author_name | Kristian Andersen |
| authorships[24].is_corresponding | False |
| authorships[24].raw_affiliation_strings | Department of Immunology and Microbiology The Scripps Research Institute La Jolla CA USA |
| authorships[25].author.id | https://openalex.org/A5027207468 |
| authorships[25].author.orcid | https://orcid.org/0000-0002-1237-2747 |
| authorships[25].author.display_name | Andrew Bartko |
| authorships[25].countries | US |
| authorships[25].affiliations[0].institution_ids | https://openalex.org/I36258959 |
| authorships[25].affiliations[0].raw_affiliation_string | University of California San Diego |
| authorships[25].institutions[0].id | https://openalex.org/I36258959 |
| authorships[25].institutions[0].ror | https://ror.org/0168r3w48 |
| authorships[25].institutions[0].type | education |
| authorships[25].institutions[0].lineage | https://openalex.org/I36258959 |
| authorships[25].institutions[0].country_code | US |
| authorships[25].institutions[0].display_name | University of California, San Diego |
| authorships[25].author_position | last |
| authorships[25].raw_author_name | Andrew Bartko |
| authorships[25].is_corresponding | False |
| authorships[25].raw_affiliation_strings | University of California San Diego |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://www.researchsquare.com/article/rs-7492978/latest.pdf |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10015 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9994000196456909 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | Genomics and Phylogenetic Studies |
| related_works | https://openalex.org/W638577851, https://openalex.org/W2968354375, https://openalex.org/W2359440920, https://openalex.org/W2889550857, https://openalex.org/W3013372948, https://openalex.org/W3135997498, https://openalex.org/W4242417330, https://openalex.org/W3132280623, https://openalex.org/W4321232597, https://openalex.org/W2964912953 |
| cited_by_count | 0 |
| locations_count | 3 |
| best_oa_location.id | doi:10.21203/rs.3.rs-7492978/v1 |
| best_oa_location.is_oa | True |
| best_oa_location.source | |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | https://www.researchsquare.com/article/rs-7492978/latest.pdf |
| best_oa_location.version | acceptedVersion |
| best_oa_location.raw_type | posted-content |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | False |
| best_oa_location.raw_source_name | |
| best_oa_location.landing_page_url | https://doi.org/10.21203/rs.3.rs-7492978/v1 |
| primary_location.id | doi:10.21203/rs.3.rs-7492978/v1 |
| primary_location.is_oa | True |
| primary_location.source | |
| primary_location.license | cc-by |
| primary_location.pdf_url | https://www.researchsquare.com/article/rs-7492978/latest.pdf |
| primary_location.version | acceptedVersion |
| primary_location.raw_type | posted-content |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | False |
| primary_location.raw_source_name | |
| primary_location.landing_page_url | https://doi.org/10.21203/rs.3.rs-7492978/v1 |
| publication_date | 2025-09-10 |
| publication_year | 2025 |
| referenced_works | https://openalex.org/W2732190217, https://openalex.org/W4400916586, https://openalex.org/W2124799197, https://openalex.org/W4402039681, https://openalex.org/W4400040037, https://openalex.org/W4322768617, https://openalex.org/W2963276645, https://openalex.org/W4402922790, https://openalex.org/W4220990048, https://openalex.org/W1991003805, https://openalex.org/W4404770452, https://openalex.org/W2805625853, https://openalex.org/W3103145119, https://openalex.org/W4320900840, https://openalex.org/W4402348265, https://openalex.org/W2789843538, https://openalex.org/W2950785362, https://openalex.org/W2990925943, https://openalex.org/W2170551349, https://openalex.org/W4313555591, https://openalex.org/W4382631636, https://openalex.org/W2736364303, https://openalex.org/W4401703519, https://openalex.org/W4294993265, https://openalex.org/W4381716637, https://openalex.org/W4387012793, https://openalex.org/W3023627704, https://openalex.org/W2999539828, https://openalex.org/W4287220132, https://openalex.org/W2892206041, https://openalex.org/W2938817672, https://openalex.org/W4388033386, https://openalex.org/W4389783840, https://openalex.org/W3003257820, https://openalex.org/W2907712446, https://openalex.org/W4310611359, https://openalex.org/W4220999759, https://openalex.org/W2045204781, https://openalex.org/W3177046243, https://openalex.org/W2938868597, https://openalex.org/W2168909179, https://openalex.org/W4315588572, https://openalex.org/W2951912016, https://openalex.org/W4306871314, https://openalex.org/W3205855923, https://openalex.org/W4407680353, https://openalex.org/W4295102941, https://openalex.org/W4403395756, https://openalex.org/W4391020526, https://openalex.org/W4396519604, https://openalex.org/W2921342657, https://openalex.org/W3194968687, https://openalex.org/W4323316829, https://openalex.org/W3182618630, https://openalex.org/W3045244624, https://openalex.org/W4402581631, https://openalex.org/W2031611770, https://openalex.org/W4376133202, https://openalex.org/W4388802540, https://openalex.org/W4284696817, https://openalex.org/W2595203212, https://openalex.org/W2946191791, https://openalex.org/W4406558191, https://openalex.org/W4224943843, https://openalex.org/W3170689505 |
| referenced_works_count | 65 |
| abstract_inverted_index | |
| cited_by_percentile_year | |
| countries_distinct_count | 1 |
| institutions_distinct_count | 26 |
| citation_normalized_percentile.value | 0.38139382 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |