Virome Survey of Banana Plantations and Surrounding Plants in Malawi Article Swipe
J. I. G. Masangwa
,
Coline Temple
,
Johan Rollin
,
François Maclot
,
Serkan Önder
,
Jamestone Kamwendo
,
Elizabeth Mwafongo
,
Philemon Moses
,
Isaac R. Fandika
,
Sébastien Massart
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.3390/v17081068
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.3390/v17081068
A virome survey of banana plantations and their surrounding plants was carried out at nation-wide level in Malawi using virion associated nucleic acids (VANA) high throughput sequencing (HTS) on pooled samples and appropriate alien controls. In total, 366 plants were sequenced, and 23 plant virus species were detected, three species on banana (275 plants) and 20 species in surrounding plants (91 plants). Two putative novel virus species; ginger tymo-like virus and pepper derived totivirus were detected and confirmed by RT-PCR on ginger and pepper. Nine known virus species and detected a host plant was identified for two of them. No viral exchange between banana and surrounding plants was observed. Results from the VANA protocol, applied to pooled banana samples, were compared with previous targeted PCR results obtained from individual banana samples. HTS test detected better BanMMV than IC-(RT)-PCR on individual samples (better inclusivity) but detected with much lower sensitivity BBTV and BSV species, often with less than 10 reads per sample. Detection of novel and known viruses and new host plants calls for strengthened sanitory and phytosanitory measures within and beyond banana production systems. Our research confirms that HTS sensitivity depends on sampling, pooling protocol and targeted virus species.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/v17081068
- https://www.mdpi.com/1999-4915/17/8/1068/pdf?version=1753956064
- OA Status
- gold
- References
- 67
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4412845263
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4412845263Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.3390/v17081068Digital Object Identifier
- Title
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Virome Survey of Banana Plantations and Surrounding Plants in MalawiWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-07-31Full publication date if available
- Authors
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J. I. G. Masangwa, Coline Temple, Johan Rollin, François Maclot, Serkan Önder, Jamestone Kamwendo, Elizabeth Mwafongo, Philemon Moses, Isaac R. Fandika, Sébastien MassartList of authors in order
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https://doi.org/10.3390/v17081068Publisher landing page
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https://www.mdpi.com/1999-4915/17/8/1068/pdf?version=1753956064Direct link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.mdpi.com/1999-4915/17/8/1068/pdf?version=1753956064Direct OA link when available
- Concepts
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Biology, Human virome, Pepper, Host (biology), Virus, Plant virus, Botany, Horticulture, Virology, Ecology, Metagenomics, Genetics, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
- References (count)
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67Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5013351119 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 10 |
| corresponding_institution_ids | https://openalex.org/I157674565, https://openalex.org/I27895137 |
| citation_normalized_percentile.value | 0.23120929 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |