What Happens Inside the Germinating Grain After Microbial Decontamination by Pulsed Electric Field? Data‐Driven Multi‐Omics Helps Find the Answer Article Swipe
Milena Stránská
,
Adam Behner
,
Jaroslava Ovesná
,
Pavel Svoboda
,
Jana Hajšlová
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.20944/preprints202412.0917.v1
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.20944/preprints202412.0917.v1
Pulsed electric field (PEF) has previously been recognized as a method of gentle food processing and its use has been shown to be helpful in reducing the levels of toxigenic Fusarium micromycetes developed during malting. The aim of this study was to describe the effect of PEF on gene expression and metabolite production at the pre-finishing stage of barley malting by using a novel multi-omics data-driven approach. The study helps to uncover the processes occurring in the germinated grain, and discusses the up-/downregulation of genes and metabolites in relation with fungal infection and/or PEF-induced abiotic stress. Among the factors upregulated by PEF and previously described as supportive against Fusarium diseases, we identified increased expression of gene encoding vegetative gp1-like protein which positively correlated with flavonoids, (methylsulfanyl)prop-2-enoates, triterpenoid glycosides and indole alkaloids. On the other hand, some genes associated with barley resistance to fungal infection were also overexpressed in the untreated control (in particular genes encoding ethylene response factor 3-like, putrescine hydroxycinnamoyltransferase 3-like and dirigent protein 21-like). The study provides the first 'data-driven' basic research results that contribute to the understanding of the role of PEF as an effective fungal decontamination strategy, and allows the formulation of new hypotheses related to Fusarium-pathogen cross-talk.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.20944/preprints202412.0917.v1
- OA Status
- green
- Related Works
- 10
- OpenAlex ID
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All OpenAlex metadata
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https://openalex.org/W4405335652Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.20944/preprints202412.0917.v1Digital Object Identifier
- Title
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What Happens Inside the Germinating Grain After Microbial Decontamination by Pulsed Electric Field? Data‐Driven Multi‐Omics Helps Find the AnswerWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-12-11Full publication date if available
- Authors
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Milena Stránská, Adam Behner, Jaroslava Ovesná, Pavel Svoboda, Jana HajšlováList of authors in order
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https://doi.org/10.20944/preprints202412.0917.v1Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
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greenOpen access status per OpenAlex
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https://doi.org/10.20944/preprints202412.0917.v1Direct OA link when available
- Concepts
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Human decontamination, Omics, Germination, Electric field, Field (mathematics), Computer science, Biochemical engineering, Biology, Biotechnology, Environmental science, Engineering, Physics, Bioinformatics, Mathematics, Waste management, Botany, Pure mathematics, Quantum mechanicsTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.toxigenic | 29 |
| abstract_inverted_index.untreated | 149 |
| abstract_inverted_index.alkaloids. | 130 |
| abstract_inverted_index.associated | 137 |
| abstract_inverted_index.contribute | 176 |
| abstract_inverted_index.correlated | 122 |
| abstract_inverted_index.expression | 49, 113 |
| abstract_inverted_index.germinated | 77 |
| abstract_inverted_index.glycosides | 127 |
| abstract_inverted_index.hypotheses | 197 |
| abstract_inverted_index.identified | 111 |
| abstract_inverted_index.metabolite | 51 |
| abstract_inverted_index.particular | 152 |
| abstract_inverted_index.positively | 121 |
| abstract_inverted_index.previously | 5, 103 |
| abstract_inverted_index.processing | 14 |
| abstract_inverted_index.production | 52 |
| abstract_inverted_index.putrescine | 159 |
| abstract_inverted_index.recognized | 7 |
| abstract_inverted_index.resistance | 140 |
| abstract_inverted_index.supportive | 106 |
| abstract_inverted_index.vegetative | 117 |
| abstract_inverted_index.PEF-induced | 93 |
| abstract_inverted_index.cross-talk. | 201 |
| abstract_inverted_index.data-driven | 65 |
| abstract_inverted_index.flavonoids, | 124 |
| abstract_inverted_index.formulation | 194 |
| abstract_inverted_index.metabolites | 86 |
| abstract_inverted_index.multi-omics | 64 |
| abstract_inverted_index.upregulated | 99 |
| abstract_inverted_index.micromycetes | 31 |
| abstract_inverted_index.triterpenoid | 126 |
| abstract_inverted_index.overexpressed | 146 |
| abstract_inverted_index.pre-finishing | 55 |
| abstract_inverted_index.understanding | 179 |
| abstract_inverted_index.decontamination | 189 |
| abstract_inverted_index.Fusarium-pathogen | 200 |
| abstract_inverted_index.up-/downregulation | 82 |
| abstract_inverted_index.hydroxycinnamoyltransferase | 160 |
| abstract_inverted_index.'data-driven' | 171 |
| abstract_inverted_index.(methylsulfanyl)prop-2-enoates, | 125 |
| cited_by_percentile_year | |
| countries_distinct_count | 0 |
| institutions_distinct_count | 5 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/2 |
| sustainable_development_goals[0].score | 0.5899999737739563 |
| sustainable_development_goals[0].display_name | Zero hunger |
| citation_normalized_percentile.value | 0.32487144 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |