Abhimanyu Sarkar
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View article: BioNeuralNet: A Graph Neural Network based Multi-Omics Network Data Analysis Tool.
BioNeuralNet: A Graph Neural Network based Multi-Omics Network Data Analysis Tool. Open
Multi-omics data offer unprecedented insights into complex biological systems, yet their high dimensionality, sparsity, and intricate interactions pose significant analytical challenges. Network-based approaches have advanced multi-omics r…
View article: Single Cell Transcriptome Signatures of Sarcoidosis in Lung Immune Cell Populations
Single Cell Transcriptome Signatures of Sarcoidosis in Lung Immune Cell Populations Open
Rationale To identify cell specific molecular changes associated with sarcoidosis risk and progression, we aimed to characterize the cellular composition, gene expression patterns, and cell-cell interactions in BAL cells from patients with…
View article: Lathyrus sativus LS007 genome assembly and annotation Rbp1.0
Lathyrus sativus LS007 genome assembly and annotation Rbp1.0 Open
Genome assembly of grass pea (Lathyrus sativus L.) genotype LS007, assembled from PromethION nanopore data and polished using Illumina HiSeq PE data. The assembly was annotated using the mikado-minos pipeline developed by the Earlham Insti…
View article: Lathyrus sativus LS007 genome assembly and annotation Rbp1.0
Lathyrus sativus LS007 genome assembly and annotation Rbp1.0 Open
Genome assembly of grass pea (Lathyrus sativus L.) genotype LS007, assembled from PromethION nanopore data and polished using Illumina HiSeq PE data. The assembly was annotated using the mikado-minos pipeline developed by the Earlham Insti…
View article: Lathyrus sativus LS007 genome assembly and annotation Rbp1.0
Lathyrus sativus LS007 genome assembly and annotation Rbp1.0 Open
Genome assembly of grass pea (Lathyrus sativus L.) genotype LS007, assembled from PromethION nanopore data and polished using Illumina HiSeq PE data. The assembly was annotated using the mikado-minos pipeline developed by the Earlham Insti…
View article: A draft genome of grass pea (<i>Lathyrus sativus</i>), a resilient diploid legume
A draft genome of grass pea (<i>Lathyrus sativus</i>), a resilient diploid legume Open
We have sequenced the genome of grass pea ( Lathyrus sativus ), a resilient diploid (2n=14) legume closely related to pea ( Pisum sativum ). We determined the genome size of the sequenced European accession (LS007) as 6.3 Gbp. We generated…
View article: Linking a rapid throughput plate-assay with high-sensitivity stable-isotope label LCMS quantification permits the identification and characterisation of low β-L-ODAP grass pea lines
Linking a rapid throughput plate-assay with high-sensitivity stable-isotope label LCMS quantification permits the identification and characterisation of low β-L-ODAP grass pea lines Open
Background Grass pea ( Lathyrus sativus ) is an underutilised crop with high tolerance to drought and flooding stress and potential for maintaining food and nutritional security in the face of climate change. The presence of the neurotoxin…
View article: Speed breeding in growth chambers and glasshouses for crop breeding and model plant research
Speed breeding in growth chambers and glasshouses for crop breeding and model plant research Open
1. Abstract To meet the challenge of feeding a growing population, breeders and scientists are continuously looking for ways to increase genetic gain in crop breeding. One way this can be achieved is through “speed breeding” (SB), which sh…