Adele Crane
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View article: Actinomadura welshii sp. nov., a New Mycetoma Agent in Mexico
Actinomadura welshii sp. nov., a New Mycetoma Agent in Mexico Open
Actinomadura isolates obtained from seven human mycetoma cases in Mexico were characterized using nucleotide sequence analysis of a portion of the small subunit ribosomal RNA gene. Most isolates were identified as Actinomadura madurae. How…
View article: Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages
Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages Open
Bacteriophages infecting pathogenic hosts play an important role in medical research, not only as potential treatments for antibiotic-resistant infections but also offering novel insights into pathogen genetics and evolution. A prominent e…
View article: Evolutionary history of<i>Mycobacterium leprae</i>in the Pacific Islands
Evolutionary history of<i>Mycobacterium leprae</i>in the Pacific Islands Open
As one of the oldest known human diseases, leprosy or Hansen's disease remains a public health concern around the world with over 200 000 new cases in 2018. Most human leprosy cases are caused by Mycobacterium leprae , but a small number o…
View article: The Complete Genome Sequence of the <i>Staphylococcus</i> Bacteriophage Metroid
The Complete Genome Sequence of the <i>Staphylococcus</i> Bacteriophage Metroid Open
Phages infecting bacteria of the genus Staphylococcus play an important role in their host’s ecology and evolution. On one hand, horizontal gene transfer from phage can encourage the rapid adaptation of pathogenic Staphylococcus enabling t…
View article: The complete genome sequence of the<i>Staphylococcus</i>bacteriophage Metroid
The complete genome sequence of the<i>Staphylococcus</i>bacteriophage Metroid Open
Phages infecting bacteria of the genus Staphylococcus play an important role in their host’s ecology and evolution. On one hand, horizontal gene transfer from phage can encourage the rapid adaptation of pathogenic Staphylococcus enabling t…
View article: SI Table 3 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 3 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Mapping, fragment length, and DNA damage comparison between samples extracted with DBT and samples extracted with DAB + UDG treatment
View article: SI Table 2 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 2 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Summary of sample information, DNA concentration, and qPCR assay results for all samples that were extracted by extraction type
View article: SI Table 4 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 4 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Summary of DNA damage patterns for all samples that were sequenced without UDG treatment and samples that were sequenced with and without having been UDG treated
View article: SI Table 6 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 6 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
List of unique SNPs by sample with their effect
View article: SI Table 1 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 1 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Sample information and whole genome analysis for comparative data and samples used in this study
View article: SI Table 2 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 2 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Summary of sample information, DNA concentration, and qPCR assay results for all samples that were extracted by extraction type
View article: SI Table 5 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 5 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Concatenated outputs from SnpEff for the nine samples with sufficient coverage for SNP analysis
View article: SI Table 1 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 1 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Sample information and whole genome analysis for comparative data and samples used in this study
View article: SI Table 8 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 8 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Summary of substitution rates and tMRCA estimates across different SNP alignments
View article: SI Table 7 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI Table 7 from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
Branch defining nonsynonymous SNPs and nonsynonymous SNPs unique to the genomes produced in this study
View article: SI BST Analysis from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands
SI BST Analysis from Evolutionary history of <i>Mycoba leprae</i> in the Pacific Islands Open
.xml file for Bayesian skyline analysis run (BEASTv2.4.5) using a SNP alignment generated with 2184 SNPs as well as invariant sites. Run was completed under a relaxed lognormal clock and a GTR model.
View article: The Global Registry of Biodiversity Repositories: A Call for Community Curation
The Global Registry of Biodiversity Repositories: A Call for Community Curation Open
The Global Registry of Biodiversity Repositories is an online metadata resource for biodiversity collections, the institutions that contain them, and associated staff members. The registry provides contact and address information, characte…