Alain J Mbebi
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View article: Towards genetic architecture and genomic prediction of crop traits from time-series data: Challenges and breakthroughs
Towards genetic architecture and genomic prediction of crop traits from time-series data: Challenges and breakthroughs Open
Advances in remote and proximal sensing have facilitated temporal high-throughput phenotyping of crop populations grown in field conditions. The resulting time-series phenotypic data capture single or multiple growth- and yield-related tra…
View article: Advances in multi-trait genomic prediction approaches: classification, comparative analysis, and perspectives
Advances in multi-trait genomic prediction approaches: classification, comparative analysis, and perspectives Open
Traits in any organism are not independent, but show considerable integration, observed in a form of couplings and trade-offs. Therefore, improvement in one trait may affect other traits, often in undesired direction. To account for this p…
View article: Comparative analysis of genomic prediction approaches for multiple time-resolved traits in maize
Comparative analysis of genomic prediction approaches for multiple time-resolved traits in maize Open
Ability to accurately predict multiple growth-related traits over plant developmental trajectories has the potential to revolutionize crop breeding and precision agriculture. Despite increased availability of time-resolved data for multipl…
View article: Predicting plant trait dynamics from genetic markers
Predicting plant trait dynamics from genetic markers Open
View article: Advances in multi-trait genomic prediction approaches: Classification, comparative analysis, and perspectives
Advances in multi-trait genomic prediction approaches: Classification, comparative analysis, and perspectives Open
Traits in any organism are not independent, but show considerable integration, observed in a form of couplings and trade-offs. Therefore, improvement in one trait may affect other traits, often in undesired direction. To account for this p…
View article: Dynamics of plant phenome can be accurately predicted from genetic markers
Dynamics of plant phenome can be accurately predicted from genetic markers Open
Molecular and physiological changes across crop developmental stages shape the plant phenome and render its prediction from genetic markers challenging. Here we present dynamicGP, an efficient computational approach that combines genomic p…
View article: Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection Open
Despite extensive research efforts, reconstruction of gene regulatory networks (GRNs) from transcriptomics data remains a pressing challenge in systems biology. While non-linear approaches for reconstruction of GRNs show improved performan…
View article: Repositiry for the article: "Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection" by Alain Mbebi & Zoran Nikoloski
Repositiry for the article: "Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection" by Alain Mbebi & Zoran Nikoloski Open
This is the repository for the manuscript "Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection" by Alain J. Mbebi & Zoran Nikoloski. Organisation The folder Codes co…
View article: Repositiry for the article: "Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection" by Alain Mbebi & Zoran Nikoloski
Repositiry for the article: "Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection" by Alain Mbebi & Zoran Nikoloski Open
This is the repository for the manuscript "Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection" by Alain J. Mbebi & Zoran Nikoloski. Organisation The folder Codes co…
View article: Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection Open
Despite extensive research efforts, reconstruction of gene regulatory networks (GRNs) from transcriptomics data remains a pressing challenge in systems biology. While non-linear approaches for reconstruction of GRNs show improved performan…
View article: A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids
A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids Open
Genomic prediction has revolutionized crop breeding despite remaining issues of transferability of models to unseen environmental conditions and environments. Usage of endophenotypes rather than genomic markers leads to the possibility of …
View article: L2,1-norm regularized multivariate regression model with applications to genomic prediction
L2,1-norm regularized multivariate regression model with applications to genomic prediction Open
Motivation Genomic selection (GS) is currently deemed the most effective approach to speed up breeding of agricultural varieties. It has been recognized that consideration of multiple traits in GS can improve accuracy of prediction for tra…