Andrey O. Plotnikov
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View article: Methanoculleus bovis sp. nov., a New Methanogenic Hydrogen-Utilizing Archaeon from the Cow Rumen
Methanoculleus bovis sp. nov., a New Methanogenic Hydrogen-Utilizing Archaeon from the Cow Rumen Open
A new methanogenic archaeon (strain 7T T ) was isolated from the content of the bovine rumen (Moscow region, Russia). Morphologically, the strain has nonmotile coccoid irregularly shaped cells, 1.3–4.3 μm cells, single or in small aggregat…
View article: Transcriptomic data sets for <i>Salmonella enterica</i> serovar Typhimurium 14028S that survived ingestion by <i>Acanthamoeba castellanii</i> , hydrogen peroxide treatment, or starvation
Transcriptomic data sets for <i>Salmonella enterica</i> serovar Typhimurium 14028S that survived ingestion by <i>Acanthamoeba castellanii</i> , hydrogen peroxide treatment, or starvation Open
Salmonella is a pathogenic bacterium that can survive in hostile environments and inside heterotrophic protozoan cells. Here, we present transcriptomic data for Salmonella enterica grown in a rich medium, cultured under starvation conditio…
View article: Cappable-seq RNA-sequencing data sets for comparative studying of <i>Salmonella enterica</i> adaptation to <i>Acanthamoeba castellanii</i> intracellular environment, oxidative stress, and starvation
Cappable-seq RNA-sequencing data sets for comparative studying of <i>Salmonella enterica</i> adaptation to <i>Acanthamoeba castellanii</i> intracellular environment, oxidative stress, and starvation Open
Salmonella is a foodborne pathogen that can survive various stresses and replicate inside protist cells. Here, we present high-resolution Cappable-seq transcriptomic data for Salmonella enterica 14028S under starvation and hydrogen peroxid…
View article: Transcriptome sequencing data sets of <i>Escherichia coli</i> K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin
Transcriptome sequencing data sets of <i>Escherichia coli</i> K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin Open
This report presents transcriptome datasets for Escherichia coli MG1655 treated with novobiocin, rifampicin, and tetracycline. Clusters of genes that respond to inhibition of RNA synthesis, protein synthesis, and DNA gyrase activity have b…
View article: Prokaryotic assemblages of halophilic protists in laboratory cultures
Prokaryotic assemblages of halophilic protists in laboratory cultures Open
Protists inhabit waters with different salinities up to saturation, and play significant roles in the food webs. In hypersaline environments, the simplified communities are composed of mainly pro- and eukaryotic halophilic microorganisms. …
View article: Cappable-seq RNA-sequencing data sets of <i>Escherichia coli</i> K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin
Cappable-seq RNA-sequencing data sets of <i>Escherichia coli</i> K-12 MG1655 treated with novobiocin, tetracycline, and rifampicin Open
Mapping transcription start sites and determining their activity remain a challenging task even for well-studied organisms. Here, we present Cappable-seq RNA sequencing data of Escherichia coli K-12 MG1655 after treatment with three antibi…
View article: The phase-specific dynamics in gene expression of Salmonella Typhimurium during Acanthamoeba castellanii infection
The phase-specific dynamics in gene expression of Salmonella Typhimurium during Acanthamoeba castellanii infection Open
Being facultative intracellular pathogens, the bacterium often is found in the environment. In natural habitats Salmonella are able to survive and multiply inside free-living protists that support preservation and distribution of the patho…
View article: The Cultivation of Halophilic Microalgae Shapes the Structure of Their Prokaryotic Assemblages
The Cultivation of Halophilic Microalgae Shapes the Structure of Their Prokaryotic Assemblages Open
The influence of microalgae on the formation of associated prokaryotic assemblages in halophilic microbial communities is currently underestimated. The aim of this study was to characterize shifts in prokaryotic assemblages of halophilic m…
View article: Flourishing in Darkness: Protist Communities of Water Sites in Shulgan-Tash Cave (Southern Urals, Russia)
Flourishing in Darkness: Protist Communities of Water Sites in Shulgan-Tash Cave (Southern Urals, Russia) Open
Karst caves, formed by the erosion of soluble carbonate rocks, provide unique ecosystems characterized by stable temperatures and high humidity. These conditions support diverse microbial communities, including wall microbial fouling, aqua…
View article: Effect of Artemisia absinthium (Asteraceae) and Cobalt Supplementation on Rumen Bacterial Community in Cattle
Effect of Artemisia absinthium (Asteraceae) and Cobalt Supplementation on Rumen Bacterial Community in Cattle Open
Background: One of the key tasks of livestock development is to reduce the amount of feed needed for raising and fattening cattle, as well as increase the efficiency of feed use. A possible solution to these problems are plant-based feed a…
View article: Editorial: Microbial associations formed and hosted by protists, algae, and fungi
Editorial: Microbial associations formed and hosted by protists, algae, and fungi Open
EDITORIAL article Front. Microbiol., 05 January 2024Sec. Microbial Symbioses Volume 14 - 2023 | https://doi.org/10.3389/fmicb.2023.1341058
View article: A clinical case of posttraumatic osteomyelitis associated with <i>kytococcus schroeteri</i> and <i>enterococcus faecalis</i>
A clinical case of posttraumatic osteomyelitis associated with <i>kytococcus schroeteri</i> and <i>enterococcus faecalis</i> Open
Introduction. In most cases, osteomyelitis is the monomicrobial disease caused by various Gram-positive bacteria. However, previous injury may contribute to formation of a microbial association. Presence of two or more pathogens in the inf…
View article: Unexpected ubiquity of heart‐shaped scale morphotype in Centroplasthelida (Haptista): Ancestral trait or multiple acquisitions?
Unexpected ubiquity of heart‐shaped scale morphotype in Centroplasthelida (Haptista): Ancestral trait or multiple acquisitions? Open
Centrohelids (Haptista: Centroplasthelida) are axopodial protists with a remarkable diversity of external siliceous scale morphologies. It is believed that the last common ancestor of centrohelids had a double layer of siliceous scales com…
View article: Taxonomic diversity and functional potential of microbial communities in salt lakes Gudzhirganskoe and Nukhe-Nur (Barguzin depression, Baikal Rift Zone)
Taxonomic diversity and functional potential of microbial communities in salt lakes Gudzhirganskoe and Nukhe-Nur (Barguzin depression, Baikal Rift Zone) Open
On the territory of the Barguzin depression (Baikal Rift Zone) there are salt lakes, which are unique natural formations formed in exceptional natural conditions and experiencing extreme shifts in seasonal environmental conditions. This pa…
View article: Features of reducing industrial injuries in russia and abroad
Features of reducing industrial injuries in russia and abroad Open
The main legislative requirements for labor protection in different countries are considered. The rules for ensuring labor safety in Russia, Germany, Italy and Japan have a common basis and are generally similar, however, they have some fe…
View article: Taxonomic Composition of Protist Communities in the Coastal Stratified Lake Kislo-Sladkoe (Kandalaksha Bay, White Sea) Revealed by Microscopy
Taxonomic Composition of Protist Communities in the Coastal Stratified Lake Kislo-Sladkoe (Kandalaksha Bay, White Sea) Revealed by Microscopy Open
Lake Kislo-Sladkoe is a stratified water body partly isolated from the White Sea. Perennial meromixis in the lake irregularly alternates with mixing events. Taking into account that the protists of Arctic coastal stratified water bodies ar…
View article: Macrophage Phenotype in Combination with Tumor Microbiome Composition Predicts RCC Patients’ Survival: A Pilot Study
Macrophage Phenotype in Combination with Tumor Microbiome Composition Predicts RCC Patients’ Survival: A Pilot Study Open
The identification of new prognostic markers of renal cell carcinoma (RCC) is an urgent problem in oncourology. To investigate the potential prognostic significance of tumor microbiome and stromal inflammatory markers, we studied a cohort …
View article: Genome Characterization and Probiotic Potential of Corynebacterium amycolatum Human Vaginal Isolates
Genome Characterization and Probiotic Potential of Corynebacterium amycolatum Human Vaginal Isolates Open
The vaginal microbiome of healthy women contains nondiphtheria corynebacteria. The role and functions of nondiphtheria corynebacteria in the vaginal biotope are still under study. We sequenced and analysed the genomes of three vaginal C. a…
View article: PSI-B-27 Association of multiple SNP in the LRP4 gene with features of the cattle elemental status
PSI-B-27 Association of multiple SNP in the LRP4 gene with features of the cattle elemental status Open
Bovine syndactyly is an autosomal monogenic recessive trait associated with multiple mutations in the LRP4 gene encoding low-density lipoprotein receptor-related protein 4. This protein is a specific facilitator of sclerostin-mediated inhi…
View article: Cappable-Seq Reveals Specific Patterns of Metabolism and Virulence for Salmonella Typhimurium Intracellular Survival within Acanthamoeba castellanii
Cappable-Seq Reveals Specific Patterns of Metabolism and Virulence for Salmonella Typhimurium Intracellular Survival within Acanthamoeba castellanii Open
The bacterial pathogen Salmonella enterica, which causes enteritis, has a broad host range and extensive environmental longevity. In water and soil, Salmonella interacts with protozoa and multiplies inside their phagosomes. Although this r…
View article: Prognostic Significance of the Microbiome and Stromal Cells Phenotype in Esophagus Squamous Cell Carcinoma
Prognostic Significance of the Microbiome and Stromal Cells Phenotype in Esophagus Squamous Cell Carcinoma Open
Esophageal cancer is one of the most aggressive malignant neoplasms, with low survival rates and limited treatment options. In this study we analyzed the microbiome composition and the phenotype of inflammatory tumor infiltrate in squamous…
View article: Lung Microbiome Differentially Impacts Survival of Patients with Non-Small Cell Lung Cancer Depending on Tumor Stroma Phenotype
Lung Microbiome Differentially Impacts Survival of Patients with Non-Small Cell Lung Cancer Depending on Tumor Stroma Phenotype Open
The link between a lung tumor and the lung microbiome is a largely unexplored issue. To investigate the relationship between a lung microbiome and the phenotype of an inflammatory stromal infiltrate, we studied a cohort of 89 patients with…
View article: Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia Open
Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illum…
View article: Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation
Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation Open
Salmonella enterica is an ubiquitous pathogen throughout the world causing gastroenteritis in humans and animals. Survival of pathogenic bacteria in the external environment may be associated with the ability to overcome the stress caused …
View article: Molecular Genetic Aspects of the Optimizing Effect of Oxytocin on the Reparative Processes of Rabbit Eye Corneal Epithelial and Stromal Structures
Molecular Genetic Aspects of the Optimizing Effect of Oxytocin on the Reparative Processes of Rabbit Eye Corneal Epithelial and Stromal Structures Open
The aim of study was to determine the regenerative effect of oxytocin on the expression of PAX6, MKI67, TAB3 genes, respectively, during experimental corneal erosion. Material and methods . The study involved experimental animals divided i…
View article: Ecological and evolutionary patterns in the enigmatic protist genus Percolomonas (Heterolobosea; Discoba) from diverse habitats
Ecological and evolutionary patterns in the enigmatic protist genus Percolomonas (Heterolobosea; Discoba) from diverse habitats Open
The heterotrophic flagellate Percolomonas cosmopolitus (Heterolobosea) is often observed in saline habitats worldwide, from coastal waters to saturated brines. However, only two cultures assigned to this morphospecies have been examined us…