Ann Bucklin
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View article: Taxonomic uncertainty in North Atlantic and Mediterranean zooplankton limits species-level monitoring accuracy
Taxonomic uncertainty in North Atlantic and Mediterranean zooplankton limits species-level monitoring accuracy Open
Taxonomic discussions often permeate the broader scientific community slowly, yet they may hold more relevance than typically assumed. In many zooplankton groups, identification issues arise from cryptic species complexes, increasingly rev…
View article: Metabarcoding and morphological analysis of diets of mesopelagic fishes in the NW Atlantic Slope Water
Metabarcoding and morphological analysis of diets of mesopelagic fishes in the NW Atlantic Slope Water Open
DNA metabarcoding and morphological taxonomic (microscopic) analysis of the gut contents was used to examine diet diversity of seven species of fishes collected from mesopelagic depths (200-1000 m) in the NW Atlantic Ocean Slope Water duri…
View article: Using DNA metabarcoding to reveal prey diversity in diets of juvenile black sea bass (Centropristis striata) in Long Island Sound in the Northwest Atlantic Ocean
Using DNA metabarcoding to reveal prey diversity in diets of juvenile black sea bass (Centropristis striata) in Long Island Sound in the Northwest Atlantic Ocean Open
View article: Salpa genome and developmental transcriptome analyses reveal molecular flexibility enabling reproductive success in a rapidly changing environment
Salpa genome and developmental transcriptome analyses reveal molecular flexibility enabling reproductive success in a rapidly changing environment Open
Ocean warming favors pelagic tunicates, such as salps, that exhibit increasingly frequent and rapid population blooms, impacting trophic dynamics and composition and human marine-dependent activities. Salp blooms are a result of their succ…
View article: Salpa genome and developmental transcriptome analyses reveal molecular flexibility enabling reproductive success in a rapidly changing environment
Salpa genome and developmental transcriptome analyses reveal molecular flexibility enabling reproductive success in a rapidly changing environment Open
View article: Salpa genome and developmental transcriptome analyses reveal molecular flexibility enabling reproductive success in a rapidly changing environment
Salpa genome and developmental transcriptome analyses reveal molecular flexibility enabling reproductive success in a rapidly changing environment Open
Ocean warming favors pelagic tunicates, such as salps, that exhibit increasingly frequent and rapid population blooms, impacting trophic dynamics and composition and human marine-dependent activities. Salp blooms are a result of their succ…
View article: Transition from stromatolite to thrombolite fabric: potential role for reticulopodial protists in lake microbialites of a Proterozoic ecosystem analog
Transition from stromatolite to thrombolite fabric: potential role for reticulopodial protists in lake microbialites of a Proterozoic ecosystem analog Open
Prior observations suggest that foraminiferan protists use their reticulopodia (anastomosing pseudopodia) to alter sediment fabric by disrupting laminations of subtidal marine stromatolites, erasing the layered structures in an experimenta…
View article: COI Metabarcoding of Zooplankton Species Diversity for Time-Series Monitoring of the NW Atlantic Continental Shelf
COI Metabarcoding of Zooplankton Species Diversity for Time-Series Monitoring of the NW Atlantic Continental Shelf Open
Marine zooplankton are rapid-responders and useful indicators of environmental variability and climate change impacts on pelagic ecosystems on time scales ranging from seasons to years to decades. The systematic complexity and taxonomic di…
View article: New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approaches
New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approaches Open
Marine zooplankton are key players in pelagic food webs, central links in ecosystem function, useful indicators of water masses, and rapid responders to environmental variation and climate change. Characterization of biodiversity of the ma…
View article: Population connectivity of the euphausiid, <i>Stylocheiron elongatum</i>, in the Gulf Stream (NW Atlantic Ocean) in relation to COI barcode diversity of <i>Stylocheiron</i> species
Population connectivity of the euphausiid, <i>Stylocheiron elongatum</i>, in the Gulf Stream (NW Atlantic Ocean) in relation to COI barcode diversity of <i>Stylocheiron</i> species Open
The euphausiid genus Stylocheiron includes species with biogeographical distributions spanning multiple ocean basins. Despite their circumglobal distributions, the species show low levels of genetic diversity and little or no evidence of p…
View article: Toward a global reference database of COI barcodes for marine zooplankton
Toward a global reference database of COI barcodes for marine zooplankton Open
View article: Twilight Zone Observation Network: A Distributed Observation Network for Sustained, Real-Time Interrogation of the Ocean's Twilight Zone
Twilight Zone Observation Network: A Distributed Observation Network for Sustained, Real-Time Interrogation of the Ocean's Twilight Zone Open
The ocean's twilight zone (TZ) is a vast, globe-spanning region of the ocean. Home to myriad fishes and invertebrates, mid-water fishes alone may constitute 10 times more biomass than all current ocean wild-caught fisheries combined. Life …
View article: Pathways of Pelagic Connectivity: Eukrohnia hamata (Chaetognatha) in the Arctic Ocean
Pathways of Pelagic Connectivity: Eukrohnia hamata (Chaetognatha) in the Arctic Ocean Open
The dramatic warming of the Arctic Ocean will impact pelagic ecosystems in complex ways, including shifting patterns of species distribution and abundance, and altering migration pathways and population connectivity. Species of the Phylum …
View article: Time-series metabarcoding analysis of zooplankton diversity of the NW Atlantic continental shelf
Time-series metabarcoding analysis of zooplankton diversity of the NW Atlantic continental shelf Open
Biodiversity of zooplankton is central to the functioning of ocean ecosystems, yet morphological taxonomic analysis requires teams of experts and detailed examination of many samples. Metabarcoding (DNA sequencing of short amplified region…
View article: Environmental Stress Responses and Experimental Handling Artifacts of a Model Organism, the Copepod Acartia tonsa (Dana)
Environmental Stress Responses and Experimental Handling Artifacts of a Model Organism, the Copepod Acartia tonsa (Dana) Open
Handling animals during experiments potentially affects the differential expression of genes chosen as biomarkers of sub-lethal stress. RNA sequencing was used to examine whole-transcriptome responses caused by laboratory handling of the c…
View article: S1a_Trinotate_Annotation_A_tonsa.xls
S1a_Trinotate_Annotation_A_tonsa.xls Open
Trinotate annotation for Acartia tonsa transcriptome.RNA-Seq data available in the NCBI Sequence Read Archive with the bio-project accession number PRJNA407266.
View article: S2b_Sleuth_analysis_with_TranscriptIDs
S2b_Sleuth_analysis_with_TranscriptIDs Open
Sleuth analysis with Trinity transcript IDs.RNA-Seq data available in the NCBI Sequence Read Archive with the bio-project accession number PRJNA407266.
View article: Genetics redraws pelagic biogeography of<i>Calanus</i>
Genetics redraws pelagic biogeography of<i>Calanus</i> Open
Planktonic copepods of the genus Calanus play a central role in North Atlantic/Arctic marine food webs. Here, using molecular markers, we redrew the distributional ranges of Calanus species inhabiting the North Atlantic and Arctic Oceans a…
View article: CTD data from the western Gulf of Maine collected on R/V Gulf Challenger (GC2002-4) from repeat visits to four locations from February to December 2002-2004 (REACH project)
CTD data from the western Gulf of Maine collected on R/V Gulf Challenger (GC2002-4) from repeat visits to four locations from February to December 2002-2004 (REACH project) Open
CTD data from the western Gulf of Maine collected on R/V Gulf Challenger (GC2002-4) from repeat visits to four locations from February to December 2002-2004 (REACH project).
View article: Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project)
Antarctic salp genome and RNAseq transcriptome from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project) Open
View article: Salp specimen log for genomic and transcriptomic study collected from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project)
Salp specimen log for genomic and transcriptomic study collected from ARSV Laurence M. Gould, Umitaka-Maru, R/V Polarstern LMG1110, UM-08-09, ANT-XXVII-2 in the Southern Ocean from 2009-2011 (Salp_Antarctic project) Open
This dataset is a sample log of the Salpa thompsoni specimens used for genomic and transcriptomic analysis. Collections were from three cruises in the Southern Ocean. Collections were made in Summer of 2009 during a cruise of the Umitaka-M…
View article: Supplementary 4 from Genetics redraws pelagic biogeography of <i>Calanus</i>
Supplementary 4 from Genetics redraws pelagic biogeography of <i>Calanus</i> Open
Comparison species identification between InDels and 16S in Saltenfjord - Skjerstadfjord; plus prosome length measurements
View article: Supplementary 3 from Genetics redraws pelagic biogeography of <i>Calanus</i>
Supplementary 3 from Genetics redraws pelagic biogeography of <i>Calanus</i> Open
Comparison species identification between InDels and 16S throughout entire species distributional ranges
View article: Rapid Evolutionary Rates and Unique Genomic Signatures Discovered in the First Reference Genome for the Southern Ocean Salp,<i>Salpa thompsoni</i>(Urochordata, Thaliacea)
Rapid Evolutionary Rates and Unique Genomic Signatures Discovered in the First Reference Genome for the Southern Ocean Salp,<i>Salpa thompsoni</i>(Urochordata, Thaliacea) Open
A preliminary genome sequence has been assembled for the Southern Ocean salp, Salpa thompsoni (Urochordata, Thaliacea). Despite the ecological importance of this species in Antarctic pelagic food webs and its potential role as an indicator…
View article: Vertical distribution and migration of euphausiid species in the Red Sea
Vertical distribution and migration of euphausiid species in the Red Sea Open
We addressed how the extreme environmental conditions of the Red Sea impact or alter patterns of vertical distribution and vertical migration of five euphausiid species that are known from other oceans. Euphausia diomedeae was abundant and…
View article: Phylogeography and connectivity of the<i>Pseudocalanus</i>(Copepoda: Calanoida) species complex in the eastern North Pacific and the Pacific Arctic Region
Phylogeography and connectivity of the<i>Pseudocalanus</i>(Copepoda: Calanoida) species complex in the eastern North Pacific and the Pacific Arctic Region Open
The genus Pseudocalanus (Copepoda, Calanoida) is among the most numerically dominant copepods in eastern North Pacific and Pacific-Arctic waters. We compared population connectivity and phylogeography based on DNA sequence variation…
View article: Metabarcoding of marine zooplankton: prospects, progress and pitfalls
Metabarcoding of marine zooplankton: prospects, progress and pitfalls Open
Metabarcoding (large-scale taxonomic identification of complex samples via analysis of one or few orthologous DNA regions, called barcodes) is revolutionizing analysis of biodiversity of marine zooplankton assemblages. Metabarcoding relies…
View article: Identification, Discrimination, and Discovery of Species of Marine Planktonic Ostracods Using DNA Barcodes
Identification, Discrimination, and Discovery of Species of Marine Planktonic Ostracods Using DNA Barcodes Open
The Ostracoda (Crustacea; Class Ostracoda) is a diverse, frequently abundant, and ecologically important component of the marine zooplankton assemblage. There are more than 200 described species of marine planktonic ostracods, many of whic…
View article: CTD data from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project)
CTD data from ARSV Laurence M. Gould LMG1110 in the Southern Ocean from November to December 2011 (Salp_Antarctic project) Open
View article: Phylogeography of the copepod Calanoides carinatus s.l. (Krøyer) reveals cryptic species and delimits C. carinatus s.s. distribution in SW Atlantic Ocean
Phylogeography of the copepod Calanoides carinatus s.l. (Krøyer) reveals cryptic species and delimits C. carinatus s.s. distribution in SW Atlantic Ocean Open