Arnaud Ferré
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View article: Handling Entity Normalization with no Annotated Corpus: Weakly Supervised Methods Based on Distributional Representation and Ontological Information
Handling Entity Normalization with no Annotated Corpus: Weakly Supervised Methods Based on Distributional Representation and Ontological Information Open
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View article: Improving methods for normalizing biomedical text entities with concepts from an ontology with (almost) no training data at BLAH5 the CONTES
Improving methods for normalizing biomedical text entities with concepts from an ontology with (almost) no training data at BLAH5 the CONTES Open
Entity normalization, or entity linking in the general domain, is an information extraction task that aims to annotate/bind multiple words/expressions in raw text with semantic references, such as concepts of an ontology. An ontology consi…
View article: Meet-U: Educating through research immersion
Meet-U: Educating through research immersion Open
We present a new educational initiative called Meet-U that aims to train students for collaborative work in computational biology and to bridge the gap between education and research. Meet-U mimics the setup of collaborative research proje…
View article: Florilege : a database gathering microbial phenotypes of food interest
Florilege : a database gathering microbial phenotypes of food interest Open
Food fermentation and biopreservation processes involve the use of various species and strains of bacteria and yeast. These strains are responsible for the targeted qualities of the food products that are sanitary, organoleptic (aroma and …
View article: Representation of complex terms in a vector space structured by an ontology for a normalization task
Representation of complex terms in a vector space structured by an ontology for a normalization task Open
We propose in this paper a semisupervised method for labeling terms of texts with concepts of a domain ontology. The method generates continuous vector representations of complex terms in a semantic space structured by the ontology. The pr…
View article: The smell of us – crowdsourcing human body odor evaluation
The smell of us – crowdsourcing human body odor evaluation Open
Human body odor is produced when sweat-secreted compounds are metabolized by bacteria present on the skin. The resulting volatile mixture is often negatively perceived, motivating the use of personal cosmetic deodorants. Yet body odor may …
View article: Proceedings of the 4th BioNLP Shared Task Workshop
Proceedings of the 4th BioNLP Shared Task Workshop Open
This paper presents the SeeDev Task of the BioNLP Shared Task 2016.The purpose of the SeeDev Task is the extraction from scientific articles of the descriptions of genetic and molecular mechanisms involved in seed development of the model …
View article: Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016
Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016 Open
This paper presents the Bacteria Biotope task of the BioNLP Shared Task 2016, which follows the previous 2013 and 2011 editions.The task focuses on the extraction of the locations (biotopes and geographical places) of bacteria from PubMed …