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View article: Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations Open
In the published version of this paper, the members of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortiumwere listed in the Supplementary Information; however, these members shouldhave been included in themainpaper.The originalArt…
View article: The relationship between gene co-expression network connectivity and phenotypic prediction sheds light at the core of the omnigenic theory
The relationship between gene co-expression network connectivity and phenotypic prediction sheds light at the core of the omnigenic theory Open
Recent literature on the differential role of genes within networks, including the omnigenic model, distinguishes core from peripheral genes in the layout underlying phenotypes. Cores are typically few, each of them highly contributes to p…
View article: Additional file 1 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Additional file 1 of Gene expression predictions and networks in natural populations supports the omnigenic theory Open
Additional file 1 Suppl. Table 1. Module membership of each gene.
View article: Additional file 2 of Gene expression predictions and networks in natural populations supports the omnigenic theory
Additional file 2 of Gene expression predictions and networks in natural populations supports the omnigenic theory Open
Additional file 2 Suppl. Table 2. Distribution of core, peripheral and peripheral no grey genes across modules.
View article: How to maintain a high virulence: evolution of a killer in hosts of various susceptibilities
How to maintain a high virulence: evolution of a killer in hosts of various susceptibilities Open
Pathogens should evolve to avirulence. However, while baculoviruses can be transmitted through direct contact, their main route of infection goes through the death and liquefaction of their caterpillar hosts and highly virulent strains sti…
View article: To what extent gene connectivity within co-expression network matters for phenotype prediction?
To what extent gene connectivity within co-expression network matters for phenotype prediction? Open
Recent literature on the differential role of genes within networks distinguishes core from peripheral genes. If previous works have shown contrasting features between them, whether such categorization matters for phenotype prediction rema…
View article: Additional file 2 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra
Additional file 2 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra Open
Number of SNPs detected by different callers or combinations of callers and using different filters. Table S1: Total number of SNPs detected with four different callers and applying different filters. Table S2: Comparison of number of SNPs…
View article: Additional file 1 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra
Additional file 1 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra Open
Position of SNPs on Populus trichocarpa v3.0 genome version of the SNP identified by Marroni et al. [3,4] on 5 genes. (XLSX 157 kb)
View article: Motif Disruption Domains Lead To Cancer Gene Expression Rewiring
Motif Disruption Domains Lead To Cancer Gene Expression Rewiring Open
Somatic mutations accumulate in non-coding regions of the genome during tumorigenesis, but their functional characterization presents a challenge. Somatic non-coding mutations rarely overlap among patients, which necessitates large sample …
View article: Continuous Influx of Genetic Material from Host to Virus Populations
Continuous Influx of Genetic Material from Host to Virus Populations Open
Many genes of large double-stranded DNA viruses have a cellular origin, suggesting that host-to-virus horizontal transfer (HT) of DNA is recurrent. Yet, the frequency of these transfers has never been assessed in viral populations. Here we…
View article: Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations
Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations Open
Viruses rely on widespread genetic variation and large population size for adaptation. Large DNA virus populations are thought to harbor little variation though natural populations may be polymorphic. To measure the genetic variation prese…