Benjamin C. Tendler
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View article: Author response: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy
Author response: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy Open
View article: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy
Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy Open
Carnivorans are an important study object for comparative neuroscience, as they exhibit a wide range of behaviours, ecological adaptations, and social structures. Previous studies have mainly examined relative brain size, but a comprehensi…
View article: Investigating motion-induced signal corruption in steady-state diffusion MRI
Investigating motion-induced signal corruption in steady-state diffusion MRI Open
Purpose Diffusion-weighted steady-state free precession (DW-SSFP) is a diffusion imaging sequence achieving high SNR efficiency and strong diffusion-weighting. A key challenge for in vivo DW-SSFP is the sequence’s severe motion sensitivity…
View article: Investigating the sensitivity of the diffusion MRI signal to magnetization transfer and permeability via Monte-Carlo simulations
Investigating the sensitivity of the diffusion MRI signal to magnetization transfer and permeability via Monte-Carlo simulations Open
Purpose Magnetization transfer (MT) and water exchange via permeability operate on a similar spatiotemporal scale to water diffusion. In this study, we use a simulation-based approach to characterise how MT and permeability impact (1) diff…
View article: Integration of steady-state diffusion MRI with Neural Posterior Estimation (NPE) for post-mortem investigations
Integration of steady-state diffusion MRI with Neural Posterior Estimation (NPE) for post-mortem investigations Open
Post-mortem diffusion MRI plays a key role in investigative pipelines to characterise tissue microstructure, with long scan times facilitating the acquisition of datasets with improved spatial/angular resolution and reduced artefacts versu…
View article: Multi-modal Monte Carlo MRI simulator of tissue microstructure
Multi-modal Monte Carlo MRI simulator of tissue microstructure Open
Monte Carlo simulation of MRI signals is a powerful tool for modelling and quantifying tissue microstructure. While these methods have been used in MRI for decades, they typically focus on one aspect of microstructure and one type of MRI c…
View article: Considerations and recommendations from the <scp>ISMRM</scp> diffusion study group for preclinical diffusion <scp>MRI</scp> : Part 2—Ex vivo imaging: Added value and acquisition
Considerations and recommendations from the <span>ISMRM</span> diffusion study group for preclinical diffusion <span>MRI</span> : Part 2—Ex vivo imaging: Added value and acquisition Open
The value of preclinical diffusion MRI (dMRI) is substantial. While dMRI enables in vivo non‐invasive characterization of tissue, ex vivo dMRI is increasingly being used to probe tissue microstructure and brain connectivity. Ex vivo dMRI h…
View article: Considerations and recommendations from the <scp>ISMRM</scp> diffusion study group for preclinical diffusion <scp>MRI</scp> : Part 1: In vivo small‐animal imaging
Considerations and recommendations from the <span>ISMRM</span> diffusion study group for preclinical diffusion <span>MRI</span> : Part 1: In vivo small‐animal imaging Open
Small‐animal diffusion MRI (dMRI) has been used for methodological development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. The steps from animal setup and monitoring, to acquisition,…
View article: Considerations and recommendations from the <scp>ISMRM</scp> Diffusion Study Group for preclinical diffusion <scp>MRI</scp> : Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography
Considerations and recommendations from the <span>ISMRM</span> Diffusion Study Group for preclinical diffusion <span>MRI</span> : Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography Open
Preclinical diffusion MRI (dMRI) has proven value in methods development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. While dMRI enables in vivo non‐invasive characterization of tissu…
View article: Investigating time-independent and time-dependent diffusion phenomena using steady-state diffusion MRI
Investigating time-independent and time-dependent diffusion phenomena using steady-state diffusion MRI Open
Diffusion MRI is a leading method to non-invasively characterise brain tissue microstructure across multiple domains and scales. Diffusion-weighted steady-state free precession (DW-SSFP) is an established imaging sequence for post-mortem M…
View article: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy
Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy Open
Carnivorans are an important study object for comparative neuroscience, as they exhibit a wide range of behaviours, ecological adaptations, and social structures. Previous studies have mainly examined relative brain size, but a comprehensi…
View article: Author response: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy
Author response: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy Open
View article: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy
Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy Open
Carnivorans are an important study object for comparative neuroscience, as they exhibit a wide range of behaviours, ecological adaptations, and social structures. Previous studies have mainly examined relative brain size, but a comprehensi…
View article: Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3 -- Ex vivo imaging: data processing, comparisons with microscopy, and tractography
Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3 -- Ex vivo imaging: data processing, comparisons with microscopy, and tractography Open
Preclinical diffusion MRI (dMRI) has proven value in methods development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. While dMRI enables in vivo non-invasive characterization of tissu…
View article: Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy
Comparative neuroimaging of the carnivoran brain: Neocortical sulcal anatomy Open
Carnivorans are an important study object for comparative neuroscience, as they exhibit a wide range of behaviours, ecological adaptations, and social structures. Previous studies have mainly examined relative brain size, but a comprehensi…
View article: Investigating tissue microstructure using steady-state diffusion MRI
Investigating tissue microstructure using steady-state diffusion MRI Open
Diffusion MRI is a leading method to non-invasively characterise brain tissue microstructure across multiple domains and scales. Diffusion-weighted steady-state free precession (DW-SSFP) is an established imaging sequence for post-mortem M…
View article: Automated detection of cerebral microbleeds on MR images using knowledge distillation framework
Automated detection of cerebral microbleeds on MR images using knowledge distillation framework Open
Introduction Cerebral microbleeds (CMBs) are associated with white matter damage, and various neurodegenerative and cerebrovascular diseases. CMBs occur as small, circular hypointense lesions on T2*-weighted gradient recalled echo (GRE) an…
View article: Why every lab needs a handbook
Why every lab needs a handbook Open
A lab handbook is a flexible document that outlines the ethos of a research lab or group. A good handbook will outline the different roles within the lab, explain what is expected of all lab members, provide an overview of the culture the …
View article: Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data
Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data Open
View article: An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons Open
View article: Both noise‐floor and tissue compartment difference in diffusivity contribute to FA dependence on <i>b</i>‐value in diffusion MRI
Both noise‐floor and tissue compartment difference in diffusivity contribute to FA dependence on <i>b</i>‐value in diffusion MRI Open
Noninvasive diffusion magnetic resonance imaging (dMRI) has been widely employed in both clinical and research settings to investigate brain tissue microstructure. Despite the evidence that dMRI‐derived fractional anisotropy (FA) correlate…
View article: Considerations and Recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 1 -- In vivo small-animal imaging
Considerations and Recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 1 -- In vivo small-animal imaging Open
Small-animal diffusion MRI (dMRI) has been used for methodological development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. The steps from animal setup and monitoring, to acquisition,…
View article: Tensor Image Registration Library: Automated Deformable Registration of Stand-Alone Histology Images to Whole-Brain Post-Mortem MRI Data
Tensor Image Registration Library: Automated Deformable Registration of Stand-Alone Histology Images to Whole-Brain Post-Mortem MRI Data Open
Background Accurate registration between microscopy and MRI data is necessary for validating imaging biomarkers against neuropathology, and to disentangle complex signal dependencies in microstructural MRI. Existing registration methods of…
View article: Phenotypic and genetic associations of quantitative magnetic susceptibility in UK Biobank brain imaging
Phenotypic and genetic associations of quantitative magnetic susceptibility in UK Biobank brain imaging Open
View article: An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons Open
The acquisition of MRI and histology in the same post-mortem tissue sample enables direct correlation between MRI and histologically-derived parameters. However, there still lacks a standardised automated pipeline to process histology data…
View article: Author response: The Digital Brain Bank, an open access platform for post-mortem imaging datasets
Author response: The Digital Brain Bank, an open access platform for post-mortem imaging datasets Open
Article Figures and data Abstract Editor's evaluation Introduction Results Discussion Materials and methods Appendix 1 Appendix 2 Appendix 3 Appendix 4 Data availability References Decision letter Author response Article and author informa…
View article: Open WIN Community: Data Sharing Decision Tree
Open WIN Community: Data Sharing Decision Tree Open
Materials to support researchers at the Wellcome Centre for Integrative Neuroimaging (WIN, University of Oxford) to share their data. Materials being openly developed in line with release of the WIN Open Data Portal. Please refer to the Gi…
View article: The Digital Brain Bank, an open access platform for post-mortem imaging datasets
The Digital Brain Bank, an open access platform for post-mortem imaging datasets Open
Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-resolution datasets to investigate neuroanatomy and validate the origins of image contrast through microscopy comparisons. We introduce the Digital Brain…
View article: Automated Detection of Cerebral Microbleeds on MR images using Knowledge Distillation Framework
Automated Detection of Cerebral Microbleeds on MR images using Knowledge Distillation Framework Open
Cerebral microbleeds (CMBs) are associated with white matter damage, various neu-rodegenerative and cerebrovascular diseases. CMBs occur as small, circular hypointense lesions on T2*-weighted gradient recalled echo (GRE) and susceptibility…
View article: A method to remove the influence of fixative concentration on postmortem <scp> T <sub>2</sub> </scp> maps using a kinetic tensor model
A method to remove the influence of fixative concentration on postmortem <span> T <sub>2</sub> </span> maps using a kinetic tensor model Open
Formalin fixation has been shown to substantially reduce T 2 estimates, primarily driven by the presence of fixative in tissue. Prior to scanning, post‐mortem samples are often placed into a fluid that has more favourable imaging propertie…