Benoît Auvray
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View article: Additional file 11: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps
Additional file 11: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps Open
Mean and variance N e estimated for each chromosome and for 2000 genetic distance points evenly distributed between 0.05 and 50 cM (100 and 1 generations in the past, respectively). The spreadsheets for the mean Ne were coded as: meanNerep…
View article: Additional file 10: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps
Additional file 10: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps Open
Mean and variance r2 estimated for each chromosome and for 2000 genetic distance points evenly distributed between 0.05 and 50 cM (100 and 1 generations in the past, respectively). For instance, the spreadsheets for the mean r2 were coded …
View article: Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population Open
Imputation accuracy in sheep breeds can be improved by following a set of recommendations on SNP panels, software, strategies of imputation (one- or two-step imputation), and choice of the animals to be genotyped using both high- and low-d…
View article: Copy number variants in the sheep genome detected using multiple approaches
Copy number variants in the sheep genome detected using multiple approaches Open
Background. Copy number variants (CNVs) are a type of polymorphism found to underlie phenotypic variation, both in humans and livestock. Most surveys of CNV in livestock have been conducted in the cattle genome, and often utilise only a si…
View article: Copy number variants in the sheep genome detected using multiple approaches
Copy number variants in the sheep genome detected using multiple approaches Open
Roche NimbleGen CGH array data. See readme_v2.docx for details.
View article: Additional file 1: Table S1. of Copy number variants in the sheep genome detected using multiple approaches
Additional file 1: Table S1. of Copy number variants in the sheep genome detected using multiple approaches Open
A description of the overlap of the platforms the various animals have been genotyped on. (XLSX 9Â kb)
View article: Additional file 2: Table S2. of Copy number variants in the sheep genome detected using multiple approaches
Additional file 2: Table S2. of Copy number variants in the sheep genome detected using multiple approaches Open
A list of the positions of the CNV regions on genome build UMD3_OA. (XLSX 127Â kb)
View article: Copy number variants in the sheep genome detected using multiple approaches
Copy number variants in the sheep genome detected using multiple approaches Open
Roche NimbleGen CGH array data