Brendan N. Kidd
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View article: CRISPRi-based circuits to control gene expression in plants
CRISPRi-based circuits to control gene expression in plants Open
View article: CRISPRi-based circuits to control gene expression in plants
CRISPRi-based circuits to control gene expression in plants Open
The plasmid data supporting the publication: CRISPRi-based circuits to control gene expression in plants
View article: CRISPRi-based circuits for genetic computation in plants
CRISPRi-based circuits for genetic computation in plants Open
The plasmid data supporting the publication: CRISPRi-based circuits for genetic computation in plants
View article: CRISPRi-based circuits for genetic computation in plants
CRISPRi-based circuits for genetic computation in plants Open
Synthetic gene circuits can enable new cellular behaviours by integrating multiple input signals into customisable genetic programs. However, gene circuit development in plants has been limited by a lack of orthogonal and modular parts req…
View article: Reversible CRISPRi-based circuits for genetic computation in plants
Reversible CRISPRi-based circuits for genetic computation in plants Open
The plasmid data supporting the publication: Reversible CRISPRi-based circuits for genetic computation in plants
View article: CRISPRi-based circuits for genetic computation in plants
CRISPRi-based circuits for genetic computation in plants Open
The plasmid data supporting the publication: CRISPRi-based circuits for genetic computation in plants
View article: Synthetic memory circuits for programmable cell reconfiguration in plants
Synthetic memory circuits for programmable cell reconfiguration in plants Open
Plant biotechnology predominantly relies on a restricted set of genetic parts with limited capability to customize spatiotemporal and conditional expression patterns. Synthetic gene circuits have the ability to integrate multiple customiza…
View article: Foliar resistance to Rhizoctonia solani in Arabidopsis is compromised by simultaneous loss of ethylene, jasmonate and PEN2 mediated defense pathways
Foliar resistance to Rhizoctonia solani in Arabidopsis is compromised by simultaneous loss of ethylene, jasmonate and PEN2 mediated defense pathways Open
View article: Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors Open
Rhizoctonia solani is a fungal pathogen causing substantial damage to many of the worlds’ largest food crops including wheat, rice, maize and soybean. Despite impacting global food security, little is known about the pathogenicity mechanis…
View article: Functional metabolomics as a tool to analyze Mediator function and structure in plants
Functional metabolomics as a tool to analyze Mediator function and structure in plants Open
Mediator is a multiprotein transcriptional co-regulator complex composed of four modules; Head, Middle, Tail, and Kinase. It conveys signals from promoter-bound transcriptional regulators to RNA polymerase II and thus plays an essential ro…
View article: Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to <i>Rhizoctonia solani</i> in Roots of <i>Medicago truncatula</i>
Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to <i>Rhizoctonia solani</i> in Roots of <i>Medicago truncatula</i> Open
The root-infecting necrotrophic fungal pathogen Rhizoctoniasolani causes significant disease to all the world’s major food crops. As a model for pathogenesis of legumes, we have examined the interaction of R. solani AG8 with Medicago trunc…
View article: MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana
MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana Open
The conserved protein complex known as Mediator conveys transcriptional signals by acting as an intermediary between transcription factors and RNA polymerase II. As a result, Mediator subunits play multiple roles in regulating developmenta…
View article: Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat
Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat Open
Rhizoctonia solani is a nectrotrophic fungal pathogen that causes billions of dollars of damage to agriculture worldwide and infects a broad host range including wheat, rice, potato and legumes. In this study we identify wheat genes that a…
View article: Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
We demonstrate that distinction of core and potential dispensable genomic regions of novel F. oxysporum genomes is an effective tool to facilitate effector discovery and the identification of gene content possibly linked to host specificit…
View article: Additional file 13: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 13: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Dispensable scaffold predictions in Fom -5190, Foc -38-1 and Fop -37622. (XLS 2255 kb)
View article: Additional file 10: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 10: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Fusarium sequences conserved with core and dispensable chromosomes of Fol and F_solani. (XLSX 40 kb)
View article: Additional file 6: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 6: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Orthology analysis. (XLSX 23360 kb)
View article: Additional file 21: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 21: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Properties of predicted Fop-37622 genes/proteins. (XLSX 4021 kb)
View article: Additional file 19: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 19: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Properties of predicted Fom -5190a genes/proteins. (XLSX 5099 kb)
View article: Additional file 20: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 20: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Properties of predicted Foc -38-1 genes/proteins. (XLSX 6173 kb)
View article: Additional file 8: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 8: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Repeat analysis. (XLSX 20 kb)
View article: Additional file 5: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 5: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
Summary of genome and protein sequence resources used for analysis. (XLSX 20 kb)
View article: Additional file 7: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
Additional file 7: of Comparative genomics and prediction of conditionally dispensable sequences in legumeâ infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors Open
G:C content analysis by scaffold/chromosome for legume-infecting ff. spp., and Fol and F. solani. (XLSX 338 kb)
View article: Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes
Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes Open
Jasmonic acid (JA) is an essential hormone in plant development and defense responses in Arabidopsis thaliana. Exogenous treatment with JA has recently been shown to alter root exudate profiles and the composition of root-associated bacter…