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Seabed characterization using ambient sound for a range-dependent track in the New England Mud Patch Open

Martin Siderius, Stan E. Dosso, Brian Granger · 2025

Wind-generated, ocean ambient sound data were used to characterize seabed properties along a track in the New England Mud Patch. A 15-m vertical array, consisting of 16 hydrophones, collected ambient sound data across the 50–5000 Hz freque…

Jupyter: Thinking and Storytelling with Code and Data Open

Brian Granger, Fernando Pérez · 2021

Project Jupyter is an open-source project for interactive computing widely used in data science, machine learning, and scientific computing. We argue that even though Jupyter helps users perform complex, technical work, Jupyter itself solv…

Jupyter: Thinking and Storytelling With Code and Data Open

Brian Granger, Fernando Pérez · 2021

nbgrader: A Tool for Creating and Grading Assignments in the Jupyter Notebook Open

Project Jupyter, Douglas Blank, David Bourgin, Alexander Brown, Matthias Bussonnier , et al. · 2019

nbgrader is a flexible tool for creating and grading assignments in the Jupyter Notebook (Kluyver et al., 2016).nbgrader allows instructors to create a single, master copy of an assignment, including tests and canonical solutions.From the …

nbgrader v0.5.5 Open

Jupyter, Douglas Blank, David Bourgin, Alexander Brown, Matthias Bussonnier , et al. · 2019

nbgrader version 0.5.5 is a release for the Journal of Open Source education, with the following PRs merged: PR #1057: Ensure consistency in capitalizing Jupyter Notebook PR #1049: Update test builds on Travis PR #1047: JOSE paper bib upda…

The principles of tomorrow's university Open

Daniel S. Katz, Gabrielle Allen, Lorena A. Barba, Devin R. Berg, Holly M. Bik , et al. · 2018

In the 21st Century, research is increasingly data- and computation-driven. Researchers, funders, and the larger community today emphasize the traits of openness and reproducibility. In March 2017, 13 mostly early-career research leaders w…

Altair: Interactive Statistical Visualizations for Python Open

Jake Vanderplas, Brian Granger, Jeffrey Heer, Dominik Moritz, Kanit Wongsuphasawat , et al. · 2018

Altair is a declarative statistical visualization library for Python.Statistical visualization is a constrained subset of data visualization focused on the creation of visualizations that are helpful in statistical modeling.The constrained…

Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms Open

Maura Costello, Mark Fleharty, Justin Abreu, Yossi Farjoun, Steven Ferriera , et al. · 2018

Binder 2.0 - Reproducible, interactive, sharable environments for science at scale Open

Project Jupyter, Matthias Bussonnier, Jessica Zosa Forde, Jeremy Freeman, Brian Granger , et al. · 2018

Binder is an open source web service that lets users create sharable, interactive, reproducible environments in the cloud. It is powered by other core projects in the open source ecosystem, including JupyterHub and Kubernetes for managing …

Additional file 3: of Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms Open

Maura Costello, Mark Fleharty, Justin Abreu, Yossi Farjoun, Steven Ferriera , et al. · 2018

Suggested guidelines for designing robust indexes for Illumina sequencing. (DOCX 129Â kb)

Additional file 2: of Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms Open

Maura Costello, Mark Fleharty, Justin Abreu, Yossi Farjoun, Steven Ferriera , et al. · 2018

A listingÂ 192 indexes validated at Broad Genomics across multiple library methods and sequencer models. (XLSX 17Â kb)

SymPy: symbolic computing in Python Open

Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertı́k, Sergey B Kirpichev , et al. · 2017

SymPy is an open source computer algebra system written in pure Python. It is built with a focus on extensibility and ease of use, through both interactive and programmatic applications. These characteristics have led SymPy to become a pop…

SymPy: Symbolic computing in Python Open

Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertı́k, Sergey B Kirpichev , et al. · 2016

SymPy: Symbolic computing in Python Open

Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertı́k, Sergey B Kirpichev , et al. · 2016

SymPy: Symbolic computing in Python Open

Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertı́k, Matthew Rocklin , et al. · 2016

SymPy: Symbolic computing in Python Open

Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertı́k, Matthew Rocklin , et al. · 2016

sympy: SymPy 1.0 Open

Chris Smith, Aaron Meurer, Mateusz Paprocki, Ondřej Čertı́k, Sergey B Kirpichev , et al. · 2016

See https://github.com/sympy/sympy/wiki/release-notes-for-1.0 for the release notes. Filename Description size md5 sympy-1.0.tar.gz The SymPy source installer. 4.1M 43e797de799f00f9e8fd2307dba9fab1 sympy-1.0.win32.exe Pyt…

sympy: SymPy 1.0.rc1 Open

Chris Smith, Vladimir Perić, Thilina Rathnayake, Amit Kumar, pernici , et al. · 2016

See https://github.com/sympy/sympy/wiki/release-notes-for-1.0 for the release notes. Filename Description size md5 sympy-1.0.rc1.tar.gz The SymPy source installer. 4.1M 401f7476dfae00fa1062fdcb2d8eb991 sympy-1.0.rc1.win32.exe …

View article: Jupyter Notebooks &ndash; a publishing format for reproducible computational workflows

Jupyter Notebooks – a publishing format for reproducible computational workflows Open

Thomas Kluyver, Benjamin Ragan-Kelley, Fernando Pérez, Brian Granger, Matthias Bussonnier , et al. · 2016

It is increasingly necessary for researchers in all fields to write computer code, and in order to reproduce research results, it is important that this code is published. We present Jupyter notebooks, a document format for publishing code…

View article: nbgrader: nbgrader v0.2.2

nbgrader: nbgrader v0.2.2 Open

Jessica B. Hamrick, Brian Granger, Carol Willing, Matthias Bussonnier, alope , et al. · 2015

Adds some improvements to the documentation and fixes a few small bugs: Add requests as a dependency Fix a bug where the "Create Assignment" extension was not rendering correctly in Safari Fix a bug in the "Assignment List" extension when …

View article: nbgrader: nbgrader v0.2.1

nbgrader: nbgrader v0.2.1 Open

Jessica B. Hamrick, Brian Granger, Carol Willing, Matthias Bussonnier, alope , et al. · 2015

Fixes a few small bugs in v0.2.0: Make sure checksums can be computed from cells containing unicode characters Fixes a bug where nbgrader autograde would crash if there were any cells with blank grade ids that weren't actually marked as nb…

View article: Symbolic Computing

Symbolic Computing Open

Ondřej Čertı́k, Mateusz Paprocki, Aaron Meurer, Brian Granger, Thilina Rathnayake · 2015