Brian P. Kennedy
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View article: Forensic geochemistry identifies the illegal introduction of Walleye into Lake Cascade, Idaho
Forensic geochemistry identifies the illegal introduction of Walleye into Lake Cascade, Idaho Open
Objective The illegal introduction of fish species can disrupt ecosystems, collapse food webs, and undermine recreational fishing opportunities. Determining whether introduced fish are locally reproducing is important for resource managers…
View article: Microcoleus autumnalis Cyclopeptides Present Protective Properties against Oxidative Stress
Microcoleus autumnalis Cyclopeptides Present Protective Properties against Oxidative Stress Open
Oxidative stress is a common pathological mechanism in neurodegenerative diseases. Aging leads to mitochondrial dysfunction and produces a reduction in endogenous antioxidant systems efficiency, with a consequent increase in reactive oxyge…
View article: The incorporation of environmentally derived <scp><sup>87</sup>Sr</scp>/<scp><sup>86</sup>Sr</scp> and Sr/Ca in early otolith formation of Chinook salmon
The incorporation of environmentally derived <span><sup>87</sup>Sr</span>/<span><sup>86</sup>Sr</span> and Sr/Ca in early otolith formation of Chinook salmon Open
Effective species management often requires understanding patterns of movement and habitat use. A common approach in identifying where individuals reside relies upon chemical tracers from the environment that are incorporated into an indiv…
View article: Quantifying fish otolith mineralogy for trace-element chemistry studies
Quantifying fish otolith mineralogy for trace-element chemistry studies Open
View article: Let's do the time warp again: non‐linear time series matching as a tool for sequentially structured data in ecology
Let's do the time warp again: non‐linear time series matching as a tool for sequentially structured data in ecology Open
Ecological patterns are often fundamentally chronological. However, generalization of data is necessarily accompanied by a loss of detail or resolution. Temporal data in particular contain information not only in data values but in the tem…
View article: Safety of elective paediatric surgery during the coronavirus disease 2019 pandemic
Safety of elective paediatric surgery during the coronavirus disease 2019 pandemic Open
View article: Let’s Do the Time Warp Again: Non-linear time series matching as a tool for sequentially structured data in ecology
Let’s Do the Time Warp Again: Non-linear time series matching as a tool for sequentially structured data in ecology Open
Ecological patterns are often fundamentally chronological. However, generalization of data is necessarily accompanied by a loss of detail or resolution. Temporal data in particular contains information not only in data values but in the te…
View article: Challenges in Columbia River fisheries conservation: a response to Duda <i>et al</i>.
Challenges in Columbia River fisheries conservation: a response to Duda <i>et al</i>. Open
The salmonid fisheries of the Columbia River Basin (CRB) have enormous socioeconomic, cultural, and ecological importance to numerous diverse stakeholders (eg state, federal, tribal, nonprofit), and there are a wide array of opinions and p…
View article: An Investigation into Irish Clients understanding of the Capabilities of Building Information Modelling and their Role within a Construction Project
An Investigation into Irish Clients understanding of the Capabilities of Building Information Modelling and their Role within a Construction Project Open
With an Irish BIM mandate on the horizon there appears to be a growing frustration within the Irish construction industry around the implementation, adoption and use of BIM in construction projects. With many industry professionals highlig…
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Fig. 9
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Fig. 9 Open
Boxplot of raw weekly abundance (u) of juvenile Chinook salmon (Oncorhynchus tshawytscha) and raw weekly trap efficiency, measured as the number of marked individuals in the population divided by the number of marked individuals counted or…
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Figs. 1-4
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Figs. 1-4 Open
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Table 1
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Table 1 Open
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Figure 10
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Figure 10 Open
Boxplot of raw weekly abundance (u) juvenile Chinook salmon (Oncorhynchus tshawytscha) and raw weekly trap efficiency, measured as the number of marked individuals in the population divided by the number of marked individuals counted or ca…
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Table 2
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Table 2 Open
The known parameters of unmarked abundance (U) and capture probability (p) used to produce the number of individuals caught (u), the number of individuals released upstream (n), and the number of individuals recaptured (m) for the first ye…
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data Open
View article: A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Figs. 5-8
A multiyear hierarchical Bayesian mark-recapture model incorporating data on recurring salmonid behavior to account for sparse or missing data: Supplementary Figs. 5-8 Open
View article: The sound of migration: exploring data sonification as a means of interpreting multivariate salmon movement datasets
The sound of migration: exploring data sonification as a means of interpreting multivariate salmon movement datasets Open
The migration of Pacific salmon is an important part of functioning freshwater ecosystems, but as populations have decreased and ecological conditions have changed, so have migration patterns. Understanding how the environment, and human i…
View article: A social–ecological perspective for riverscape management in the Columbia River Basin
A social–ecological perspective for riverscape management in the Columbia River Basin Open
Riverscapes are complex, landscape‐scale mosaics of connected river and stream habitats embedded in diverse ecological and socioeconomic settings. Social–ecological interactions among stakeholders often complicate natural‐resource conserva…
View article: Juvenile steelhead movements in relation to stream habitat, population density, and body size: consequences for individual growth rates
Juvenile steelhead movements in relation to stream habitat, population density, and body size: consequences for individual growth rates Open
Anadromous salmonids can display considerable movement within their natal streams prior to outmigration, reflecting behavioural responses to biotic and abiotic conditions. Here we quantify dispersal and site fidelity in juvenile steelhead …
View article: Incorporating natural variability in biological reference points and population dynamics into management of Atlantic salmon (Salmo salar L.) stocks returning to home waters
Incorporating natural variability in biological reference points and population dynamics into management of Atlantic salmon (Salmo salar L.) stocks returning to home waters Open
Following advice from the International Council for the Exploration of the Seas and North Atlantic Salmon Conservation Organization, Irish salmon stocks have been managed on a river-by-river basis since 2007 with biological reference point…
View article: Appendix A. Site specific information on sample analysis and Sr isotope values.
Appendix A. Site specific information on sample analysis and Sr isotope values. Open
Site specific information on sample analysis and Sr isotope values.
View article: Appendix B. Results from ANOVA of consumption rates for six sites and three seasons.
Appendix B. Results from ANOVA of consumption rates for six sites and three seasons. Open
Results from ANOVA of consumption rates for six sites and three seasons.
View article: Appendix C. Parameter estimates (juvenile movement and sex) for models predicting straying occurrence for adult Chinook salmon.
Appendix C. Parameter estimates (juvenile movement and sex) for models predicting straying occurrence for adult Chinook salmon. Open
Parameter estimates (juvenile movement and sex) for models predicting straying occurrence for adult Chinook salmon.
View article: Appendix A. Map of six study sites in central and southern Vermont, USA.
Appendix A. Map of six study sites in central and southern Vermont, USA. Open
Map of six study sites in central and southern Vermont, USA.
View article: Appendix A. Mean density and biomass values in forest, forest buffer, and pasture reaches for all fish species captured in the study streams in southeastern Costa Rica and trophic classification for each species.
Appendix A. Mean density and biomass values in forest, forest buffer, and pasture reaches for all fish species captured in the study streams in southeastern Costa Rica and trophic classification for each species. Open
Mean density and biomass values in forest, forest buffer, and pasture reaches for all fish species captured in the study streams in southeastern Costa Rica and trophic classification for each species.
View article: Appendix B. Cluster analysis and source site designation of individual Chinook salmon.
Appendix B. Cluster analysis and source site designation of individual Chinook salmon. Open
Cluster analysis and source site designation of individual Chinook salmon.
View article: Density dependence and its impact on individual growth rates in an age‐structured stream salmonid population
Density dependence and its impact on individual growth rates in an age‐structured stream salmonid population Open
In organisms with flexible and indeterminate growth, demographic density dependence can affect both individual fitness and population dynamics. Recent work in stream salmonids suggests that individual growth rates can be depressed even at …
View article: Local habitat conditions explain the variation in the strength of self‐thinning in a stream salmonid
Local habitat conditions explain the variation in the strength of self‐thinning in a stream salmonid Open
Self‐thinning patterns are frequently used to describe density dependence in populations on timescales shorter than the organism's life span and have been used to infer carrying capacity of the environment. Among mobile animals, this conce…
View article: Diverse Early Life-History Strategies in Migratory Amazonian Catfish: Implications for Conservation and Management
Diverse Early Life-History Strategies in Migratory Amazonian Catfish: Implications for Conservation and Management Open
Animal migrations provide important ecological functions and can allow for increased biodiversity through habitat and niche diversification. However, aquatic migrations in general, and those of the worldâs largest fish in particular, are…
View article: Diverse Early Life-History Strategies in Migratory Amazonian Catfish: Implications for Conservation and Management
Diverse Early Life-History Strategies in Migratory Amazonian Catfish: Implications for Conservation and Management Open
Animal migrations provide important ecological functions and can allow for increased biodiversity through habitat and niche diversification. However, aquatic migrations in general, and those of the world’s largest fish in particular, are i…