Bryce Fukuda
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View article: User-friendly scheduler Using a hybrid architecture and supercomputing for big data processing
User-friendly scheduler Using a hybrid architecture and supercomputing for big data processing Open
The exponential growth of omics data requires novel strategies for storage, transfer, and processing of said data. We present a scheduler based on the Temporal.io workflow framework which enables two key optimizations of bioinformatics wor…
View article: Uncovering the Pathophysiological Pattern of Expression from Integrated Analysis across Uniformly Processed RNA Sequencing COVID-19 Datasets
Uncovering the Pathophysiological Pattern of Expression from Integrated Analysis across Uniformly Processed RNA Sequencing COVID-19 Datasets Open
Background Post-acute sequelae of SARS-CoV-2 infection (PASC) affects millions globally, yet the molecular mechanisms underlying acute COVID-19 and its chronic sequelae remain poorly understood. Methods We performed an integrative transcri…
View article: Graphical and Interactive Spatial Proteomics Image Analysis Workflow
Graphical and Interactive Spatial Proteomics Image Analysis Workflow Open
Spatial proteomics provides a spatially resolved view of protein expression and localization within cells and tissues by mapping the location and abundance of proteins. There is a need for fully-integrated end-to-end imaging workflows for …