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View article: Unsupervised Whole-Genome Representation Learning Captures Bacterial Phenotypes
Unsupervised Whole-Genome Representation Learning Captures Bacterial Phenotypes Open
Shifting from hand-crafted to learned representations of data has revolutionized fields like natural language processing and computer vision. Despite this, current approaches to bacterial phenotype prediction from the genome rely on traini…
View article: Zero-shot segmentation using embeddings from a protein language model identifies functional regions in the human proteome
Zero-shot segmentation using embeddings from a protein language model identifies functional regions in the human proteome Open
The biological function of a protein is often determined by its distinct functional units, such as folded domains and intrinsically disordered regions. Identifying and categorizing these protein segments from sequence has been a major focu…
View article: To Transformers and Beyond: Large Language Models for the Genome
To Transformers and Beyond: Large Language Models for the Genome Open
In the rapidly evolving landscape of genomics, deep learning has emerged as a useful tool for tackling complex computational challenges. This review focuses on the transformative role of Large Language Models (LLMs), which are mostly based…