Cameron J. Reid
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View article: Microbial communities in biosolids-amended soils: A critical review of high-throughput sequencing approaches
Microbial communities in biosolids-amended soils: A critical review of high-throughput sequencing approaches Open
Sustainable reuse of treated wastewater sludge or biosolids in agricultural production requires comprehensive understanding of their risks and benefits. Microbes are central mediators of many biosolids-associated risks and benefits, howeve…
View article: Major F plasmid clusters are linked with ColV and pUTI89-like marker genes in bloodstream isolates of Escherichia coli
Major F plasmid clusters are linked with ColV and pUTI89-like marker genes in bloodstream isolates of Escherichia coli Open
ColV and pUTI89-like plasmid markers are predominant in BSI E. coli that carry F plasmids. These markers are associated with distinct clusters of plasmids across diverse sequence types of E. coli. We hypothesise that their abundance in BSI…
View article: Corrigendum: Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans
Corrigendum: Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans Open
Microbiology Society journals contain high-quality research papers and topical review articles. We are a not-for-profit publisher and we support and invest in the microbiology community, to the benefit of everyone. This supports our princi…
View article: Life at the borderlands: microbiomes of interfaces critical to One Health
Life at the borderlands: microbiomes of interfaces critical to One Health Open
Microbiomes are foundational components of the environment that provide essential services relating to food security, carbon sequestration, human health, and the overall well-being of ecosystems. Microbiota exert their effects primarily th…
View article: Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans Open
ST372 are widely reported as the major Escherichia coli sequence type in dogs globally. They are also a sporadic cause of extraintestinal infections in humans. Despite this, it is unknown whether ST372 strains from dogs and humans represen…
View article: Genomic and Temporal Trends in Canine ExPEC Reflect Those of Human ExPEC
Genomic and Temporal Trends in Canine ExPEC Reflect Those of Human ExPEC Open
Pathogenic E. coli that causes extraintestinal infections (ExPEC) in humans and canines represents a significant burden in hospital and veterinary settings. Despite the obvious interrelationship between dogs and humans favoring both zoonot…
View article: Erratum for Cummins et al., “F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses”
Erratum for Cummins et al., “F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses” Open
View article: A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58
A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58 Open
View article: F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses
F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses Open
E. coli ST95 is one of five dominant ExPEC lineages globally and noted for causing urinary tract and bloodstream infections and neonatal meningitis in humans and colibacillosis in poultry. Using high-resolution phylogenomics, we show that …
View article: Close genetic linkage between human and companion animal extraintestinal pathogenic Escherichia coli ST127
Close genetic linkage between human and companion animal extraintestinal pathogenic Escherichia coli ST127 Open
View article: OPA-driven hollow-core fiber as a tunable, broadband source for coherent multidimensional spectroscopy
OPA-driven hollow-core fiber as a tunable, broadband source for coherent multidimensional spectroscopy Open
Despite the impressive abilities of coherent multi-dimensional spectroscopy (CMDS), its’ implementation is limited due to the complexity of continuum generation and required phase stability between the pump pulse pair. In light of this, we…
View article: Antimicrobial Resistance Profile and ExPEC Virulence Potential in Commensal Escherichia coli of Multiple Sources
Antimicrobial Resistance Profile and ExPEC Virulence Potential in Commensal Escherichia coli of Multiple Sources Open
We recently described the genetic antimicrobial resistance and virulence profile of a collection of 279 commensal E. coli of food-producing animal (FPA), pet, wildlife and human origin. Phenotypic antimicrobial resistance (AMR) and the rol…
View article: Genomic analysis of trimethoprim-resistant extraintestinal pathogenic Escherichia coli and recurrent urinary tract infections
Genomic analysis of trimethoprim-resistant extraintestinal pathogenic Escherichia coli and recurrent urinary tract infections Open
Urinary tract infections (UTIs) are the most common bacterial infections requiring medical attention and a leading justification for antibiotic prescription. Trimethoprim is prescribed empirically for uncomplicated cases. UTIs are primaril…
View article: Snapshot Study of Whole Genome Sequences of Escherichia coli from Healthy Companion Animals, Livestock, Wildlife, Humans and Food in Italy
Snapshot Study of Whole Genome Sequences of Escherichia coli from Healthy Companion Animals, Livestock, Wildlife, Humans and Food in Italy Open
Animals, humans and food are all interconnected sources of antimicrobial resistance (AMR), allowing extensive and rapid exchange of AMR bacteria and genes. Whole genome sequencing (WGS) was used to characterize 279 Escherichia coli isolate…
View article: Whole Genome Sequencing Analysis of Porcine Faecal Commensal Escherichia coli Carrying Class 1 Integrons from Sows and Their Offspring
Whole Genome Sequencing Analysis of Porcine Faecal Commensal Escherichia coli Carrying Class 1 Integrons from Sows and Their Offspring Open
Intensive pig production systems often rely on the use of antimicrobials and heavy metal feed additives to maintain animal health and welfare. To gain insight into the carriage of antimicrobial resistance genes (ARGs) in the faecal flora o…
View article: Whole Genome Sequencing of Escherichia coli From Store-Bought Produce
Whole Genome Sequencing of Escherichia coli From Store-Bought Produce Open
The role of agriculture in the transfer of drug resistant pathogens to humans is widely debated and poorly understood. Escherichia coli is a valuable indicator organism for contamination and carriage of antimicrobial resistance (AMR…
View article: Escherichia coli ST302: Genomic Analysis of Virulence Potential and Antimicrobial Resistance Mediated by Mobile Genetic Elements
Escherichia coli ST302: Genomic Analysis of Virulence Potential and Antimicrobial Resistance Mediated by Mobile Genetic Elements Open
aEPEC are associated with persistent diarrhea, and diarrheal outbreaks in both humans and animals worldwide. They are differentiated from typical EPEC by the lack of bundle-forming pili, and from EHEC by the lack of phage-mediated stx
View article: Phylogenetic Tree
Phylogenetic Tree Open
Newick tree file described in mansucript "Whole genome sequencing analysis of porcine faecal commensal Escherichia coli carrying class 1 integrons from sows and their offspring" by Zingali et al
View article: Recombination filtered alignment
Recombination filtered alignment Open
Gubbins filtered snippy alignment of 185 E. coli genome sequences aligned to K12-MG1655 reference. From the manuscript "Whole genome sequencing analysis of porcine faecal commensal Escherichia coli carrying class 1 integrons from sows and …
View article: Clonal ST131-H22 Escherichia coli strains from a healthy pig and a human urinary tract infection carry highly similar resistance and virulence plasmids
Clonal ST131-H22 Escherichia coli strains from a healthy pig and a human urinary tract infection carry highly similar resistance and virulence plasmids Open
The interplay between food production animals, humans and the environment with respect to the transmission of drug-resistant pathogens is widely debated and poorly understood. Pandemic uropathogenic Escherichia coli ST131-H30 Rx , with con…
View article: Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Plasmids in Escherichia coli of Porcine Origin in Australia
Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Plasmids in Escherichia coli of Porcine Origin in Australia Open
IncHI2 ST3 plasmids are known carriers of multiple antimicrobial resistance genes. Complete plasmid sequences from multiple drug resistant Escherichia coli circulating in Australian swine is however limited. Here we sequenced two related I…
View article: Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene
Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene Open
Avian pathogenic Escherichia coli (APEC) cause widespread economic losses in poultry production and are potential zoonotic pathogens. Genome sequences of 95 APEC from commercial poultry operations in four Australian states that carried the…
View article: Genomic epidemiology of multidrug resistant porcine commensal Escherichia coli
Genomic epidemiology of multidrug resistant porcine commensal Escherichia coli Open
View article: Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny
Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny Open
We recently identified clonal complex 10 (CC10) Escherichia coli as the predominant clonal group in two populations of healthy Australian food-production pigs. CC10 are highly successful, colonizing humans, food-production animals, fresh p…
View article: Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26
Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26 Open
Porcine faecal waste is a serious environmental pollutant. Carriage of antimicrobial-resistance genes (ARGs) and virulence-associated genes (VAGs), and the zoonotic potential of commensal Escherichia coli from swine are largely unknown. Fu…
View article: Porcine commensal<i>Escherichia coli</i>: A reservoir for class 1 integrons associated with IS<i>26</i>
Porcine commensal<i>Escherichia coli</i>: A reservoir for class 1 integrons associated with IS<i>26</i> Open
Porcine faecal waste is a serious environmental pollutant. Carriage of antimicrobial resistance and virulence-associated genes (VAGs) and the zoonotic potential of commensal Escherichia coli from swine is largely unknown. Furthermore, litt…
View article: Magnetic stability under magnetic cycling of MgO-based magnetic tunneling junctions with an exchange-biased synthetic antiferromagnetic pinned layer
Magnetic stability under magnetic cycling of MgO-based magnetic tunneling junctions with an exchange-biased synthetic antiferromagnetic pinned layer Open
We investigate the magnetic stability and endurance of MgO-based magnetic tunnel junctions (MTJs) with an exchange-biased synthetic antiferromagnetic (SAF) pinned layer. When a uniaxially cycling switching field is applied along the easy a…