Camilla Fagorzi
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View article: Editorial: Climate is changing: harnessing plant-microbe interactions for sustainable agriculture in arid areas
Editorial: Climate is changing: harnessing plant-microbe interactions for sustainable agriculture in arid areas Open
View article: Soil bacteria and symbiotic rhizobia synergistically promote nitrogen fixation and biomass production of alfalfa (Medicago sativa L.) plants even under water shortage conditions without altering the native rhizospheric microbiota
Soil bacteria and symbiotic rhizobia synergistically promote nitrogen fixation and biomass production of alfalfa (Medicago sativa L.) plants even under water shortage conditions without altering the native rhizospheric microbiota Open
View article: Comparative Analysis of the Microbiota of <i>Vaccinium myrtillus</i> and <i>Vaccinium uliginosum</i> in the Central Italian Apennines
Comparative Analysis of the Microbiota of <i>Vaccinium myrtillus</i> and <i>Vaccinium uliginosum</i> in the Central Italian Apennines Open
Vaccinium is a genus of shrubs known for their antioxidant and anti-inflammatory compounds. While the commercially cultivated blueberry ( V. corymbosum ) originates from North America, European species like myrtillus (bilberry) and V. ulig…
View article: Toward deciphering the molecular dialogue in the rhizomicrobiota: Transcriptomic profiling of Trichoderma in rhizobia interaction
Toward deciphering the molecular dialogue in the rhizomicrobiota: Transcriptomic profiling of Trichoderma in rhizobia interaction Open
View article: Metagenomic surveys show a widespread diffusion of antibiotic resistance genes in a transect from urbanized to marine protected area
Metagenomic surveys show a widespread diffusion of antibiotic resistance genes in a transect from urbanized to marine protected area Open
View article: The Complex Epigenetic Panorama in the Multipartite Genome of the Nitrogen-Fixing Bacterium <i>Sinorhizobium meliloti</i>
The Complex Epigenetic Panorama in the Multipartite Genome of the Nitrogen-Fixing Bacterium <i>Sinorhizobium meliloti</i> Open
In prokaryotes, DNA methylation plays roles in DNA repair, gene expression, cell cycle progression, and immune recognition of foreign DNA. Genome-wide methylation patterns can vary between strains, influencing phenotype, and gene transfer.…
View article: Moving toward the Inclusion of Epigenomics in Bacterial Genome Evolution: Perspectives and Challenges
Moving toward the Inclusion of Epigenomics in Bacterial Genome Evolution: Perspectives and Challenges Open
The universality of DNA methylation as an epigenetic regulatory mechanism belongs to all biological kingdoms. However, while eukaryotic systems have been the primary focus of DNA methylation studies, the molecular mechanisms in prokaryotes…
View article: Ibuprofen: A multi-purpose active pharmaceutical ingredient as versatile ligand for zinc(II) and copper(II). Solid state and solution studies
Ibuprofen: A multi-purpose active pharmaceutical ingredient as versatile ligand for zinc(II) and copper(II). Solid state and solution studies Open
View article: Metagenomic Surveys Shows a Widespread Diffusion of Antibiotic Resistance Genes in a Transect from Urbanized to Marine Protected Area
Metagenomic Surveys Shows a Widespread Diffusion of Antibiotic Resistance Genes in a Transect from Urbanized to Marine Protected Area Open
View article: Toward Deciphering the Molecular Dialogue in the Rhizomicrobiota: Transcriptomic Profiling of Trichoderma in Rhizobia Interaction
Toward Deciphering the Molecular Dialogue in the Rhizomicrobiota: Transcriptomic Profiling of Trichoderma in Rhizobia Interaction Open
View article: Metagenomic Surveys Shows a Widespread Diffusion of Antibiotic Resistance Genes in a Transect from Urbanized to Marine Protected Area
Metagenomic Surveys Shows a Widespread Diffusion of Antibiotic Resistance Genes in a Transect from Urbanized to Marine Protected Area Open
View article: Salt Stress Highlights the Relevance of Genotype × Genotype Interaction in the Nitrogen-Fixing Symbiosis between Sinorhizobium meliloti and Alfalfa
Salt Stress Highlights the Relevance of Genotype × Genotype Interaction in the Nitrogen-Fixing Symbiosis between Sinorhizobium meliloti and Alfalfa Open
Sustainable-forage production is globally increasing, especially in marginal areas where the edaphic conditions for plant growth are not optimal. Soil salinization influences the symbiotic interaction between alfalfa and rhizobia. The effi…
View article: The pan-epigenome of the symbiotic nitrogen fixing bacterium Sinorhizobium meliloti unravels unexpected variability of DNA-methylation profiles in closely related strains
The pan-epigenome of the symbiotic nitrogen fixing bacterium Sinorhizobium meliloti unravels unexpected variability of DNA-methylation profiles in closely related strains Open
Supplementary Dataset S1. Genome coverage data and assignment of contigs to S. meliloti 1021 genome replicons. MS Excel file format (.xlsx file) Supplementary Dataset S2. Folder containing summary pangenome statistics, core and ac…
View article: The pan-epigenome of the symbiotic nitrogen fixing bacterium Sinorhizobium meliloti unravels unexpected variability of DNA-methylation profiles in closely related strains
The pan-epigenome of the symbiotic nitrogen fixing bacterium Sinorhizobium meliloti unravels unexpected variability of DNA-methylation profiles in closely related strains Open
Supplementary Dataset S1. Genome coverage data and assignment of contigs to S. meliloti 1021 genome replicons. MS Excel file format (.xlsx file) Supplementary Dataset S2. Folder containing summary pangenome statistics, core and ac…
View article: The pan-epigenome of the symbiotic nitrogen fixing bacterium<i>Sinorhizobium meliloti</i>unravels unexpected variability of DNA-methylation profiles in closely related strains
The pan-epigenome of the symbiotic nitrogen fixing bacterium<i>Sinorhizobium meliloti</i>unravels unexpected variability of DNA-methylation profiles in closely related strains Open
In prokaryotes, DNA methylation has been found to be involved in several mechanisms, such as DNA repair, DNA–protein interactions, gene expression, cell cycle progression and self-DNA recognition (the Restriction-Modification systems). Stu…
View article: CCDC 2231746: Experimental Crystal Structure Determination
CCDC 2231746: Experimental Crystal Structure Determination Open
An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available …
View article: Ruthenium(II) Polypyridyl Complexes and Metronidazole Derivatives: A Powerful Combination in the Design of Photoresponsive Antibacterial Agents Effective under Hypoxic Conditions
Ruthenium(II) Polypyridyl Complexes and Metronidazole Derivatives: A Powerful Combination in the Design of Photoresponsive Antibacterial Agents Effective under Hypoxic Conditions Open
Ruthenium(II) polypyridyl complexes (RPCs) are gaining momentum in photoactivated chemotherapy (PACT), thanks to the possibility of overcoming the classical reliance on molecular oxygen of photodynamic therapy while preserving the selectiv…
View article: Crossing Bacterial Genomic Features and Methylation Patterns with MeStudio: An Epigenomic Analysis Tool
Crossing Bacterial Genomic Features and Methylation Patterns with MeStudio: An Epigenomic Analysis Tool Open
DNA methylation is one of the most observed epigenetic modifications. It is present in eukaryotes and prokaryotes and is related to several biological phenomena, including gene flow and adaptation to environmental conditions. The widesprea…
View article: Effect of Wastewater on the Composition of Bacterial Microbiota of Phragmites australis Used in Constructed Wetlands for Phytodepuration
Effect of Wastewater on the Composition of Bacterial Microbiota of Phragmites australis Used in Constructed Wetlands for Phytodepuration Open
Phytodepuration occurs in the plant-mediated remediation processes exploited to remove pollutants from wastewater, and Phragmites australis is one of the most used plants. This goal is achieved using constructed wetlands (CW), which are en…
View article: MeStudio: crossing methylation and genomic features for comparative epigenomic analyses
MeStudio: crossing methylation and genomic features for comparative epigenomic analyses Open
DNA methylation is one of the most relevant epigenetic modifications. It is present in eukaryotes and prokaryotes and is related to several biological phenomena, including gene flow and adaptation to environmental conditions. The widesprea…
View article: Extraction and analysis of methylation features from Pacific Biosciences SMRT reads using MeStudio
Extraction and analysis of methylation features from Pacific Biosciences SMRT reads using MeStudio Open
Motivation DNA methylation is the most relevant epigenetic information, present in eukaryotes and prokaryotes, and is related to several biological phenomena, from cellular differentiation to control of gene flow, pathogenesis and virulenc…
View article: Differential Response of Wheat Rhizosphere Bacterial Community to Plant Variety and Fertilization
Differential Response of Wheat Rhizosphere Bacterial Community to Plant Variety and Fertilization Open
The taxonomic assemblage and functions of the plant bacterial community are strongly influenced by soil and host plant genotype. Crop breeding, especially after the massive use of nitrogen fertilizers which led to varieties responding bett…
View article: Scent of a Symbiont: The Personalized Genetic Relationships of Rhizobium—Plant Interaction
Scent of a Symbiont: The Personalized Genetic Relationships of Rhizobium—Plant Interaction Open
Many molecular signals are exchanged between rhizobia and host legume plants, some of which are crucial for symbiosis to take place, while others are modifiers of the interaction, which have great importance in the competition with the soi…
View article: Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation
Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation Open
Supplementary Material for ‘Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation’, as published in International Journal of Systematic and Evolutionary Microbiology.
View article: CCDC 2087306: Experimental Crystal Structure Determination
CCDC 2087306: Experimental Crystal Structure Determination Open
View article: CCDC 2087305: Experimental Crystal Structure Determination
CCDC 2087305: Experimental Crystal Structure Determination Open
An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available …
View article: Nitroimidazole-Based Ruthenium(II) Complexes: Playing with Structural Parameters to Design Photostable and Light-Responsive Antibacterial Agents
Nitroimidazole-Based Ruthenium(II) Complexes: Playing with Structural Parameters to Design Photostable and Light-Responsive Antibacterial Agents Open
5-Nitroimidazole (5NIMH), chosen as a molecular model of nitroimidazole derivatives, which represent a broad-spectrum class of antimicrobials, was incorporated into the ruthenium complexes [Ru(tpy)(phen)(5NIM)]PF6 (1) and…
View article: Endophytes from African Rice (Oryza glaberrima L.) Efficiently Colonize Asian Rice (Oryza sativa L.) Stimulating the Activity of Its Antioxidant Enzymes and Increasing the Content of Nitrogen, Carbon, and Chlorophyll
Endophytes from African Rice (Oryza glaberrima L.) Efficiently Colonize Asian Rice (Oryza sativa L.) Stimulating the Activity of Its Antioxidant Enzymes and Increasing the Content of Nitrogen, Carbon, and Chlorophyll Open
Bacterial endophytes support the adaptation of host plants to harsh environments. In this study, culturable bacterial endophytes were isolated from the African rice Oryza glaberrima L., which is well-adapted to grow with poor external inpu…
View article: Taxonomy of <i>Rhizobiaceae</i> revisited: proposal of a new framework for genus delimitation
Taxonomy of <i>Rhizobiaceae</i> revisited: proposal of a new framework for genus delimitation Open
The alphaproteobacterial family Rhizobiaceae is highly diverse, with 168 species with validly published names classified into 17 genera with validly published names. Most named genera in this family are delineated based on genomic relatedn…
View article: Legume tasters: symbiotic rhizobia host preference and smart inoculant formulations
Legume tasters: symbiotic rhizobia host preference and smart inoculant formulations Open
Mutualistic interactions have great importance in ecology, with genetic information that takes shape through interactions within the symbiotic partners and between the partners and the environment. It is known that variation of the host-as…