Caroline Barretto
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View article: Editorial: Genomics and metagenomics approaches for food value chain quality, safety, and product development
Editorial: Genomics and metagenomics approaches for food value chain quality, safety, and product development Open
ISSN:1664-302X
View article: Whole Genome Sequencing Applied to Pathogen Source Tracking in Food Industry: Key Considerations for Robust Bioinformatics Data Analysis and Reliable Results Interpretation
Whole Genome Sequencing Applied to Pathogen Source Tracking in Food Industry: Key Considerations for Robust Bioinformatics Data Analysis and Reliable Results Interpretation Open
Whole genome sequencing (WGS) has arisen as a powerful tool to perform pathogen source tracking in the food industry thanks to several developments in recent years. However, the cost associated to this technology and the degree of expertis…
View article: Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data
Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data Open
Salmonella is one of the most common causes of food-borne diseases worldwide. While Salmonella molecular subtyping by Whole Genome Sequencing (WGS) is increasingly used for outbreak and source tracking investigations, serotyping remains as…
View article: Whole genome sequencing used in an industrial context reveals a Salmonella laboratory cross-contamination
Whole genome sequencing used in an industrial context reveals a Salmonella laboratory cross-contamination Open
In 2013, during a routine laboratory analysis performed on food samples, one finished product from a European factory was tested positive for Salmonella Hadar. At the same period, one environmental isolate in the same laboratory was seroty…
View article: A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica
A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica Open
Whole genome sequencing (WGS), using high throughput sequencing technology, reveals the complete sequence of the bacterial genome in a few days. WGS is increasingly being used for source tracking, pathogen surveillance and outbreak investi…
View article: Genome Sequence of Lactobacillus fermentum Strain NCC2970 (CNCM I-5068)
Genome Sequence of Lactobacillus fermentum Strain NCC2970 (CNCM I-5068) Open
Lactobacillus fermentum NCC2970 (CNCM I-5068) is a lactic acid bacterium originating from the Nestle Culture Collection. Here, we disclose its full 1.9-Gb genome sequence comprising one chromosome with no plasmid.
View article: Fully Closed Genome Sequences of Five Type Strains of the Genus <i>Cronobacter</i> and One <i>Cronobacter sakazakii</i> Strain
Fully Closed Genome Sequences of Five Type Strains of the Genus <i>Cronobacter</i> and One <i>Cronobacter sakazakii</i> Strain Open
Cronobacter is associated with infant infections and the consumption of reconstituted infant formula. Here we sequenced and closed six genomes of C. condimenti T , C. muytjensii T , C. universalis T , C. malonaticus T , C. dublinensis T , …