Xiuxin Deng
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View article: Pan-S-locus analysis reveals insights into the origin and evolution of self-incompatibility in the orange subfamily
Pan-S-locus analysis reveals insights into the origin and evolution of self-incompatibility in the orange subfamily Open
Through the construction and characterization of the pan-S-locus, this study provides profound insight into the origin and evolution of the S-locus in the orange subfamily. These findings not only advance our understanding of self-incompat…
View article: Transcriptional regulation of thorn tip sclerification in plants
Transcriptional regulation of thorn tip sclerification in plants Open
A common characteristic of thorns, prickles, and spines is a hardened and sharp tip. This feature complicates cultivation and postharvest processing for many crops, yet the molecular mechanisms governing this specific sclerification proces…
View article: Molecular mechanisms of high levels of L-ascorbic acid accumulation in chestnut rose fruits
Molecular mechanisms of high levels of L-ascorbic acid accumulation in chestnut rose fruits Open
The fruit of chestnut rose (Rosa roxburghii Tratt.) contains exceptionally high levels of L-ascorbic acid (AsA) (∼1762 mg/100 g fresh weight), approximately 40-fold higher than those found in sweet orange (Citrus sinensis), which is well k…
View article: Author Correction: Origin and de novo domestication of sweet orange
Author Correction: Origin and de novo domestication of sweet orange Open
View article: Chromosome-level assembly of Prunus serrula Franch genome
Chromosome-level assembly of Prunus serrula Franch genome Open
View article: Origin and de novo domestication of sweet orange
Origin and de novo domestication of sweet orange Open
View article: Genomic origin of <i>Citrus reticulata</i> “Unshiu”
Genomic origin of <i>Citrus reticulata</i> “Unshiu” Open
Satsuma mandarin (Citrus reticulata “Unshiu”) is a global cultivar with superior fruit characteristics and ranking among the top citrus cultivars in terms of production. It is also a key contributor to citrus breeding. However, the lack of…
View article: “ <i>Candidatus</i> Liberibacter asiaticus” Infection Induces Citric Acid Accumulation and Immune Responses Mediated by the Transcription Factor CitPH4
“ <i>Candidatus</i> Liberibacter asiaticus” Infection Induces Citric Acid Accumulation and Immune Responses Mediated by the Transcription Factor CitPH4 Open
Citrus huanglongbing (HLB), caused by “ Candidatus Liberibacter” spp., is one of the most disastrous citrus diseases worldwide. HLB‐affected citrus fruits are significantly more acidic than healthy fruits. However, the molecular mechanism …
View article: Regeneration of virus-free plants from undeveloped ovules of seedless citrus cultivars: a practical approach for combating citrus viral diseases
Regeneration of virus-free plants from undeveloped ovules of seedless citrus cultivars: a practical approach for combating citrus viral diseases Open
The citrus industry is confronted with significant challenges posed by viral diseases. However, commercially favored seedless cultivars cannot be propagated through seeds to generate virus-free plants. Obtaining virus-free plants from seed…
View article: Genome-wide identification of ARID-HMG related genes in citrus and functional analysis of FhARID1 in apomixis and axillary bud development
Genome-wide identification of ARID-HMG related genes in citrus and functional analysis of FhARID1 in apomixis and axillary bud development Open
View article: A novel C2H2‐type zinc‐finger transcription factor, CitZAT4, regulates ethylene‐induced orange coloration in Satsuma mandarin flavedo (<i>Citrus unshiu</i> Marc.)
A novel C2H2‐type zinc‐finger transcription factor, CitZAT4, regulates ethylene‐induced orange coloration in Satsuma mandarin flavedo (<i>Citrus unshiu</i> Marc.) Open
Ethylene treatment promotes orange coloration in the flavedo of Satsuma mandarin ( Citrus unshiu Marc.) fruit, but the corresponding regulatory mechanism is still largely unknown. In this study, we identified a C2H2‐type zinc‐finger transc…
View article: The abscisic acid-responsive transcriptional regulatory module CsERF110–CsERF53 orchestrates citrus fruit coloration
The abscisic acid-responsive transcriptional regulatory module CsERF110–CsERF53 orchestrates citrus fruit coloration Open
View article: Developing a simple and rapid method for cell-specific transcriptome analysis through laser microdissection: insights from citrus rind with broader implications
Developing a simple and rapid method for cell-specific transcriptome analysis through laser microdissection: insights from citrus rind with broader implications Open
Background With the rapid development of single-cell sequencing technology, histological studies are no longer limited to conventional homogenized tissues. Laser microdissection enables the accurate isolation of specific tissues or cells, …
View article: Identifying citrus self-incompatibility genotypes (S-genotypes) and discovering self-compatible mutants
Identifying citrus self-incompatibility genotypes (S-genotypes) and discovering self-compatible mutants Open
Utilizing 32 previously identified S ribonuclease ( S - RNase ) gene sequences and abundant citrus resources, this study designed specific primers for 10 S - RNase genes. A total of 32 pairs of primers were used to analyze the self-incompa…
View article: Neofunctionalization of an <i>OMT</i> cluster dominates polymethoxyflavone biosynthesis associated with the domestication of citrus
Neofunctionalization of an <i>OMT</i> cluster dominates polymethoxyflavone biosynthesis associated with the domestication of citrus Open
Polymethoxyflavones (PMFs) are a class of abundant specialized metabolites with remarkable anticancer properties in citrus. Multiple methoxy groups in PMFs are derived from methylation modification catalyzed by a series of hydroxylases and…
View article: The definition, classification and evolution of citrus based on whole genome sequence information
The definition, classification and evolution of citrus based on whole genome sequence information Open
Citrus is one of the most widely grown economic crops in the world. The wide sexual compatibility on inter-specific and even inter-generic level and the prevalent asexual variation of Citrus have led to the formation of the highly diverse …
View article: Cytochrome P450 CitCYP97B modulates carotenoid accumulation diversity by hydroxylating β-cryptoxanthin in Citrus
Cytochrome P450 CitCYP97B modulates carotenoid accumulation diversity by hydroxylating β-cryptoxanthin in Citrus Open
Carotenoids in plant foods provide health benefits by functioning as provitamin A. One of the vital provitamin A carotenoids, β-cryptoxanthin, is typically plentiful in citrus fruit. However, little is known about the genetic basis of β-cr…
View article: CsERF003 Enhanced Peel Coloration by Promoting Both Chlorophyll Degradation and Carotenoid Accumulation in Citrus
CsERF003 Enhanced Peel Coloration by Promoting Both Chlorophyll Degradation and Carotenoid Accumulation in Citrus Open
View article: Phased genomics reveals hidden somatic mutations and provides insight into fruit development in sweet orange
Phased genomics reveals hidden somatic mutations and provides insight into fruit development in sweet orange Open
Although revisiting the discoveries and implications of genetic variations using phased genomics is critical, such efforts are still lacking. Somatic mutations represent a crucial source of genetic diversity for breeding and are especially…
View article: A metabolomics study in citrus provides insight into bioactive phenylpropanoid metabolism
A metabolomics study in citrus provides insight into bioactive phenylpropanoid metabolism Open
Citrus fruits are widely consumed worldwide in juices or as fresh and provide a broad range of phytonutrients that are important for human health. Here, a citrus multi-omics resource is presented: comprehensive metabolic profiling of vario…
View article: Transposable elements cause the loss of self‐incompatibility in citrus
Transposable elements cause the loss of self‐incompatibility in citrus Open
Summary Self‐incompatibility (SI) is a widespread prezygotic mechanism for flowering plants to avoid inbreeding depression and promote genetic diversity. Citrus has an S ‐RNase‐based SI system, which was frequently lost during evolution. W…
View article: The transcriptional regulatory module <scp>CsHB5‐CsbZIP44</scp> positively regulates abscisic acid‐mediated carotenoid biosynthesis in citrus (<i>Citrus</i> spp.)
The transcriptional regulatory module <span>CsHB5‐CsbZIP44</span> positively regulates abscisic acid‐mediated carotenoid biosynthesis in citrus (<i>Citrus</i> spp.) Open
Summary Carotenoids contribute to fruit coloration and are valuable sources of provitamin A in the human diet. Abscisic acid (ABA) plays an essential role in fruit coloration during citrus fruit ripening, but little is known about the unde…
View article: Transcription factor CsTT8 promotes fruit coloration by positively regulating the methylerythritol 4-phosphate pathway and carotenoid biosynthesis pathway in citrus (<i>Citrus</i> spp.)
Transcription factor CsTT8 promotes fruit coloration by positively regulating the methylerythritol 4-phosphate pathway and carotenoid biosynthesis pathway in citrus (<i>Citrus</i> spp.) Open
Carotenoids directly influence citrus fruit color and nutritional value, which is critical to consumer acceptance. Elucidating the potential molecular mechanism underlying carotenoid metabolism is of great importance for improving fruit qu…
View article: CrWRKY42 positively regulates chlorophyll degradation and carotenoid biosynthesis in citrus
CrWRKY42 positively regulates chlorophyll degradation and carotenoid biosynthesis in citrus Open
Chlorophyll degradation and carotenoid biosynthesis, which occur almost simultaneously during fruit ripening, are essential for coloration and nutritional value of fruits. However, the synergistic regulation of these two processes at trans…
View article: Plant lysin motif extracellular proteins are required for arbuscular mycorrhizal symbiosis
Plant lysin motif extracellular proteins are required for arbuscular mycorrhizal symbiosis Open
Arbuscular mycorrhizal fungi (AMF) can form a mutually beneficial symbiotic relationship with most land plants. They are known to secrete lysin motif (LysM) effectors into host root cells for successful colonization. Intriguingly, plants s…
View article: Genomic conservation of crop wild relatives: A case study of citrus
Genomic conservation of crop wild relatives: A case study of citrus Open
Conservation of crop wild relatives is critical for plant breeding and food security. The lack of clarity on the genetic factors that lead to endangered status or extinction create difficulties when attempting to develop concrete recommend…
View article: Carotenoid and transcriptome profiles of a novel citrus cultivar ‘Jinlegan’ reveal mechanisms of yellowish fruit formation
Carotenoid and transcriptome profiles of a novel citrus cultivar ‘Jinlegan’ reveal mechanisms of yellowish fruit formation Open
Citrus fruit coloration is one of the vital quality traits that is determined primarily by the composition and content of carotenoids. Natural citrus fruit pigment mutants are available to study diverse and complex carotenoid metabolism. H…
View article: Launching Horticulture Advances: horticultural plants for a better life
Launching Horticulture Advances: horticultural plants for a better life Open
View article: Transcription factor CsMADS3 coordinately regulates chlorophyll and carotenoid pools in <i>Citrus</i> hesperidium
Transcription factor CsMADS3 coordinately regulates chlorophyll and carotenoid pools in <i>Citrus</i> hesperidium Open
Citrus, 1 of the largest fruit crops with global economic and nutritional importance, contains fruit known as hesperidium with unique morphological types. Citrus fruit ripening is accompanied by chlorophyll degradation and carotenoid biosy…
View article: Evolution‐guided multiomics provide insights into the strengthening of bioactive flavone biosynthesis in medicinal pummelo
Evolution‐guided multiomics provide insights into the strengthening of bioactive flavone biosynthesis in medicinal pummelo Open
Summary Pummelo ( Citrus maxima or Citrus grandis ) is a basic species and an important type for breeding in Citrus. Pummelo is used not only for fresh consumption but also for medicinal purposes. However, the molecular basis of medicinal …